RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 A0A1B0GV50 99 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 SOCS6O14544 535 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 GPR171O14626 319 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 PRAF2O60831 178 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 ANXA7P20073 488 aaKnown RBP13.36□□□□□ -0.27
LIMS1-215ENST00000544547 S100A10P60903 97 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 CLLU1Q5K131 121 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 FAAP20Q6NZ36 180 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 LIPIQ6XZB0 460 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 ATCAYQ86WG3 371 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 OR5M3Q8NGP4 307 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 ZMYND19Q96E35 227 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-215ENST00000544547 TREX2Q9BQ50 279 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-215ENST00000544547 CKLFQ9UBR5 152 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 FER1L6Q2WGJ9 1857 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 RHPN2P1A8MT19 583 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 TO15178 435 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 ZNF35P13682 527 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 CXCL3P19876 107 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 MMP11P24347 488 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 XCR1P46094 333 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 CLCNKAP51800 687 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 PGDP52209 483 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 OR10A3P58181 314 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 VRK3Q8IV63 474 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 LIX1LQ8IVB5 337 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 SAMD14Q8IZD0 417 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-215ENST00000544547 OR8D4Q8NGM9 314 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 ZNF461Q8TAF7 563 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 KATNBL1Q9H079 304 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 C20orf85Q9H1P6 137 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 LYARQ9NX58 379 aaKnown RBP13.36□□□□□ -0.27
LIMS1-215ENST00000544547 GPN3Q9UHW5 284 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-215ENST00000544547 PTPRFP10586 1907 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 RNF13O43567 381 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 KLK8O60259 260 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 SGSHP51688 502 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 TMEM115Q12893 351 aaPredicted RBP13.36□□□□□ -0.27
LIMS1-215ENST00000544547 PAN3Q58A45 887 aaKnown RBP13.36□□□□□ -0.27
LIMS1-215ENST00000544547 TCEAL5Q5H9L2 206 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 GRHL2Q6ISB3 625 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 TMEM107Q6UX40 140 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 FCRLAQ7L513 359 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 ANKRD53Q8N9V6 530 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 DUSP19Q8WTR2 217 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 IFT22Q9H7X7 185 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 ANKRD31Q8N7Z5 1873 aa13.36□□□□□ -0.27
LIMS1-215ENST00000544547 TCRBV16S1A1N1A0A5B0 115 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 POP7O75817 140 aaKnown RBP13.35□□□□□ -0.27
LIMS1-215ENST00000544547 PPP3CBP16298 524 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 ZNF8P17098 575 aaPredicted RBP13.35□□□□□ -0.27
LIMS1-215ENST00000544547 ACVR1Q04771 509 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 SEC22AQ96IW7 307 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 TMEM168Q9H0V1 697 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 MRPS30Q9NP92 439 aaKnown RBP13.35□□□□□ -0.27
LIMS1-215ENST00000544547 MYEF2Q9P2K5 600 aaKnown RBP13.35□□□□□ -0.27
LIMS1-215ENST00000544547 MED31Q9Y3C7 131 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 WNT6Q9Y6F9 365 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 TRAV18A0A075B6X5 111 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 TTLL8A6PVC2 850 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 FAM171A2A8MVW0 826 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 ATG12O94817 140 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 EIF4EP06730 217 aaKnown RBP13.35□□□□□ -0.27
LIMS1-215ENST00000544547 GALTP07902 379 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 SNRPGP62308 76 aaKnown RBP13.35□□□□□ -0.27
LIMS1-215ENST00000544547 ID2Q02363 134 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 FAM74A1Q5RGS3 127 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 BHLHA9Q7RTU4 235 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 C9orf62Q8N4C0 152 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 JAGN1Q8N5M9 183 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 OR4K13Q8NH42 304 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 NANPQ8TBE9 248 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 DNAJA3Q96EY1 480 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 SCPEP1Q9HB40 452 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 SPAG17Q6Q759 2223 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 UBXN7O94888 489 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 CPEP16870 476 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 ART1P52961 327 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 DCAF4L2Q8NA75 395 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 OR9A1PQ8NGU1 263 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 THAP4Q8WY91 577 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 NUS1Q96E22 293 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 ELP4Q96EB1 424 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 PFDN5Q99471 154 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 RAD9AQ99638 391 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 MIXL1Q9H2W2 232 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 METTL8Q9H825 291 aaKnown RBP13.35□□□□□ -0.27
LIMS1-215ENST00000544547 TDP1Q9NUW8 608 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 SLC22A31A6NKX4 558 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 ADAM12O43184 909 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 SLC8B1Q6J4K2 584 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 KLHL24Q6TFL4 600 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 ENPP7Q6UWV6 458 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 TAS1R1Q7RTX1 841 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 ASB11Q8WXH4 323 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 CHST2Q9Y4C5 530 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 INSL6Q9Y581 213 aa13.35□□□□□ -0.27
LIMS1-215ENST00000544547 IGLV3-25P01717 112 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 GNALP38405 381 aa13.34□□□□□ -0.27
LIMS1-215ENST00000544547 NKPD1Q17RQ9 610 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms