RNA–Protein interactions for RNA: ENST00000540906.1

AP003559.1-201, humanhuman

TSL 3 BASIC

Gene AP003559.1, Length 1,831 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP003559.1-201ENST00000540906 MC2RQ01718 297 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 TOP3AQ13472 1001 aaPredicted RBP11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 RAB39AQ14964 217 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 BROXQ5VW32 411 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 MRPL14Q6P1L8 145 aaKnown RBP11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 KIRREL2Q6UWL6 708 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 MBOAT2Q6ZWT7 520 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 AGBL5Q8NDL9 886 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 GNPDA2Q8TDQ7 276 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 PMM1Q92871 262 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 DAZLQ92904 295 aaKnown RBP11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 SIGLEC11Q96RL6 698 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 IL4I1Q96RQ9 567 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 ADOQ96SZ5 270 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 G6PC3Q9BUM1 346 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 YIPF3Q9GZM5 350 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 ANKRD19PQ9H560 264 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 SELENONQ9NZV5 590 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 TESQ9UGI8 421 aaKnown RBP11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 MUC6Q6W4X9 2439 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 A0A0B4J2E0 115 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 A0A1B0GX12 115 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 FMO6PO60774 539 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 CBFA2T3O75081 653 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 GP1BAP07359 652 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 NGFRP08138 427 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 MAKP20794 623 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 EMP2P54851 167 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 TRA2AQ13595 282 aaKnown RBP eCLIP11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 IL11RAQ14626 422 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 CBLN3Q6UW01 205 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 FAM198BQ6UWH4 519 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 SUMF1Q8NBK3 374 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 APCDD1LQ8NCL9 501 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 PIGXQ8TBF5 258 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 RNF217Q8TC41 542 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 NR4A3Q92570 626 aa11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 NAA50Q9GZZ1 169 aaKnown RBP11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 MEPEQ9NQ76 525 aaPredicted RBP11.28□□□□□ -0.6
AP003559.1-201ENST00000540906 SMIM31A0A1B0GVY4 71 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 A0A1W2PNU3 283 aaPredicted RBP11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 SAGE2PA6NJ88 616 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 TMEM200CA6NKL6 621 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 TTC36A6NLP5 189 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 ADAM10O14672 748 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 GNB5O14775 395 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 TSPAN2O60636 221 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 CPNE3O75131 537 aaKnown RBP11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 SOX30O94993 753 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 WISP1O95388 367 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 CSTAP01040 98 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 NUBP1P53384 320 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 FXYD6P3P58550 94 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 CXCR4P61073 352 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 ALDH6A1Q02252 535 aaKnown RBP11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 SPEM2Q0P670 501 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 TSPAN31Q12999 210 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 GINS1Q14691 196 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 GTF2IRD2BQ6EKJ0 949 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 AHSA2Q719I0 299 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 GTF2IRD2Q86UP8 949 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 NAXDQ8IW45 347 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 OR4Q3Q8NH05 313 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 GGHQ92820 318 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 FGF11Q92914 225 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 OMA1Q96E52 524 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 CRB3Q9BUF7 120 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 DPH1Q9BZG8 443 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 ENKD1Q9H0I2 346 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 C14orf105Q9NVL8 296 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 IL20RAQ9UHF4 553 aa11.27□□□□□ -0.61
AP003559.1-201ENST00000540906 DYRK3O43781 588 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 PRKYO43930 277 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 REM1O75628 298 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 INMTO95050 263 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 JUNBP17275 347 aaPredicted RBP11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 SLC5A2P31639 672 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 MLLT10P55197 1068 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 CDK5Q00535 292 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 EMX1Q04741 257 aaPredicted RBP11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 DBPQ10586 325 aaPredicted RBP11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 DOC2BQ14184 412 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 PAPD4Q6PIY7 484 aaKnown RBP11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 CADM2Q8N3J6 435 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 LINC00471Q8N535 108 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 ZNF540Q8NDQ6 660 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 FAM71CQ8NEG0 241 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 THAP3Q8WTV1 239 aaPredicted RBP11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 FAR1Q8WVX9 515 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 TMEM239Q8WW34 195 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 NMD3Q96D46 503 aaKnown RBP11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 NODALQ96S42 347 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 ZNF559Q9BR84 538 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 SEMA4CQ9C0C4 833 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 CCDC90BQ9GZT6 254 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 LHPPQ9H008 270 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 SLC26A1Q9H2B4 701 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 FKBP14Q9NWM8 211 aa11.26□□□□□ -0.61
AP003559.1-201ENST00000540906 IMPAD1Q9NX62 359 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms