RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 A0A1W2PQD3 144 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 TCRBV3S1A0A5B6 114 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 AGAP5A6NIR3 686 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 FAM166BA8MTA8 275 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 B8ZZF3 427 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 KLRC4-KLRK1H3BQV0 150 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 CXCR6O00574 342 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 GNB5O14775 395 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 SLC28A2O43868 658 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 PGM3O95394 542 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 C8BP07358 591 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 ENDOUP21128 410 aaKnown RBP11.83□□□□□ -0.52
CCDC42-202ENST00000539522 LCN1P31025 176 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 KRT20P35900 424 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 MAGEA5P43359 124 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 INAQ16352 499 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 VMACQ2NL98 169 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 TIGD3Q6B0B8 471 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 CYP2R1Q6VVX0 501 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 VRK2Q86Y07 508 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 SLC30A8Q8IWU4 369 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 C11orf65Q8NCR3 313 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 FAM71CQ8NEG0 241 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 OR2M3Q8NG83 312 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 DUSP19Q8WTR2 217 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 RSRC1Q96IZ7 334 aaKnown RBP11.83□□□□□ -0.52
CCDC42-202ENST00000539522 NSMCE2Q96MF7 247 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 RNPEPL1Q9HAU8 725 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 ZFP64Q9NPA5 681 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 POLE3Q9NRF9 147 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 KLRF1Q9NZS2 232 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 P2RX2Q9UBL9 471 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 MRTO4Q9UKD2 239 aaKnown RBP11.83□□□□□ -0.52
CCDC42-202ENST00000539522 C15orf41Q9Y2V0 281 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 ZNF462Q96JM2 2506 aa11.83□□□□□ -0.52
CCDC42-202ENST00000539522 HS6ST1O60243 411 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 TPST1O60507 370 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 KRT36O76013 467 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 SNX4O95219 450 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 NR2F1P10589 423 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 NCK1P16333 377 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 HOXB6P17509 224 aaKnown RBP11.82□□□□□ -0.52
CCDC42-202ENST00000539522 SLC7A1P30825 629 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 PSMD4P55036 377 aaKnown RBP11.82□□□□□ -0.52
CCDC42-202ENST00000539522 EEF1A1P68104 462 aaKnown RBP11.82□□□□□ -0.52
CCDC42-202ENST00000539522 CDK6Q00534 326 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 HSF1Q00613 529 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 ZNF117Q03924 483 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 FGFBP1Q14512 234 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 SNCBQ16143 134 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 ZNF630Q2M218 657 aaPredicted RBP11.82□□□□□ -0.52
CCDC42-202ENST00000539522 TBCELQ5QJ74 424 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 ATAD3BQ5T9A4 648 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 METTL25Q8N6Q8 603 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 FAR1Q8WVX9 515 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 FIG4Q92562 907 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 NR4A3Q92570 626 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 PLSCR2Q9NRY7 297 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 RLIMQ9NVW2 624 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 MED11Q9P086 117 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 STX18Q9P2W9 335 aaKnown RBP11.82□□□□□ -0.52
CCDC42-202ENST00000539522 ICAM5Q9UMF0 924 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 DTNAQ9Y4J8 743 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 GPC6Q9Y625 555 aaPredicted RBP11.82□□□□□ -0.52
CCDC42-202ENST00000539522 SPTA1P02549 2419 aa11.82□□□□□ -0.52
CCDC42-202ENST00000539522 MED12Q93074 2177 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 ZNF407Q9C0G0 2248 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 TMEM247A6NEH6 219 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 SERINC4A6NH21 518 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 ZIC3O60481 467 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 GPIP06744 558 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 ATP6V1B2P21281 511 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 ATP6V1C1P21283 382 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 AQP1P29972 269 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 PCGF2P35227 344 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 ADH7P40394 386 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 B3GALT5-AS1P59052 145 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 PPIAP62937 165 aaKnown RBP11.81□□□□□ -0.52
CCDC42-202ENST00000539522 SKP2Q13309 424 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 SCARB2Q14108 478 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 TOMM34Q15785 309 aaPredicted RBP11.81□□□□□ -0.52
CCDC42-202ENST00000539522 INTS11Q5TA45 600 aaKnown RBP11.81□□□□□ -0.52
CCDC42-202ENST00000539522 PRAMEF8Q5VWM4 474 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 PRAMEF7Q5VXH5 474 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 ARSKQ6UWY0 536 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 ZNF836Q6ZNA1 936 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 PLCZ1Q86YW0 608 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 EID3Q8N140 333 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 CLIP4Q8N3C7 705 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 GPR32P1Q8NGA4 272 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 CPT1CQ8TCG5 803 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 PYDC1Q8WXC3 89 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 CNOT9Q92600 299 aaKnown RBP11.81□□□□□ -0.52
CCDC42-202ENST00000539522 FAM162AQ96A26 154 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 MIB2Q96AX9 1013 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 ZNF597Q96LX8 424 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 JSRP1Q96MG2 331 aaPredicted RBP11.81□□□□□ -0.52
CCDC42-202ENST00000539522 UGT2B28Q9BY64 529 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 DSN1Q9H410 356 aa11.81□□□□□ -0.52
CCDC42-202ENST00000539522 MTHFD2LQ9H903 347 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms