RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 CDCP1Q9H5V8 836 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 ARMC7Q9H6L4 198 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 EVA1AQ9H8M9 152 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 TRIM45Q9H8W5 580 aaPredicted RBP6.8□□□□□ -1.32
CD44-228ENST00000528455 HHATLQ9HCP6 504 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 UBQLN4Q9NRR5 601 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 STMN3Q9NZ72 180 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 RPS6KA6Q9UK32 745 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 USP22Q9UPT9 525 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 POLHQ9Y253 713 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 ANGPT4Q9Y264 503 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 DTX4Q9Y2E6 619 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 WDR45Q9Y484 360 aa6.8□□□□□ -1.32
CD44-228ENST00000528455 MED13Q9UHV7 2174 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 DSPPQ9NZW4 1301 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 BOD1L1Q8NFC6 3051 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 GXYLT2A0PJZ3 443 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 AGAP5A6NIR3 686 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 NPIPB9F8W1W9 429 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ARPC2O15144 300 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 HS6ST1O60243 411 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 PRKNO60260 465 aaPredicted RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 PPM1BO75688 479 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 C1QL1O75973 258 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 PDE5AO76074 875 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 IGKV1D-16P01601 117 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 BCHEP06276 602 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 DBIP07108 87 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 NGFRP08138 427 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ITGAMP11215 1152 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 SFTPCP11686 197 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ATP6V1C1P21283 382 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 TBXA2RP21731 343 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ABCD3P28288 659 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 KCNJ5P48544 419 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 TMED10P49755 219 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 POLE2P56282 527 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ACTR3P61158 418 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 CHRNEQ04844 493 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 EGR3Q06889 387 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 LY6DQ14210 128 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 FLOT2Q14254 428 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 LARS2Q15031 903 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 MEP1AQ16819 746 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ZNF791Q3KP31 576 aaPredicted RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 KLHL26Q53HC5 615 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ACER2Q5QJU3 275 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 C1orf146Q5VVC0 180 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 IRAK1BP1Q5VVH5 260 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 TYW3Q6IPR3 259 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 CBLL1Q75N03 491 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 EIF3MQ7L2H7 374 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 WDR53Q7Z5U6 358 aaPredicted RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 ZNF605Q86T29 641 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 SPPL2CQ8IUH8 684 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ARMC8Q8IUR7 673 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 GPALPP1Q8IXQ4 340 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 PEX5LQ8IYB4 626 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ZNF619Q8N2I2 560 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ZNF843Q8N446 348 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 OR4N2Q8NGD1 307 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 OR4C3Q8NH37 302 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 SLC26A7Q8TE54 656 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 LZICQ8WZA0 190 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 FIG4Q92562 907 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 TMBIM1Q969X1 311 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 FAM162AQ96A26 154 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ZG16BQ96DA0 208 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 TMCO6Q96DC7 493 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 PYURFQ96I23 114 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 RCC1LQ96I51 464 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 THOC3Q96J01 351 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 SGCZQ96LD1 299 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 NSMCE2Q96MF7 247 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 RNF145Q96MT1 663 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 COL21A1Q96P44 957 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 GAL3ST4Q96RP7 486 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 SECISBP2Q96T21 854 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 DOHHQ9BU89 302 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 UGT2B28Q9BY64 529 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ING2Q9H160 280 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 DENND2DQ9H6A0 471 aaPredicted RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 MBNL3Q9NUK0 354 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 FBXO34Q9NWN3 711 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 ADPRHL2Q9NX46 363 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 BAG5Q9UL15 447 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 MKLN1Q9UL63 735 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 SAMD4AQ9UPU9 718 aaKnown RBP6.79□□□□□ -1.32
CD44-228ENST00000528455 ZNF281Q9Y2X9 895 aa6.79□□□□□ -1.32
CD44-228ENST00000528455 COL6A6A6NMZ7 2263 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 HELZ2Q9BYK8 2649 aaKnown RBP6.78□□□□□ -1.32
CD44-228ENST00000528455 A0A1W2PQD3 144 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 TCRBV3S1A0A5B6 114 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 ANKRD65E5RJM6 399 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 WWP2O00308 870 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 TP53I11O14683 189 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 SUV39H1O43463 412 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 SUSD5O60279 629 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 FKBP6O75344 327 aa6.78□□□□□ -1.32
CD44-228ENST00000528455 ITGA10O75578 1167 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms