RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 ACTRT2Q8TDY3 377 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 OR5P2Q8WZ92 322 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 PIK3R3Q92569 461 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 GTPBP3Q969Y2 492 aaKnown RBP9.44□□□□□ -0.9
CPSF1-203ENST00000527916 ZNF845Q96IR2 970 aaPredicted RBP9.44□□□□□ -0.9
CPSF1-203ENST00000527916 C3orf30Q96M34 536 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 STACQ99469 402 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 PRPF18Q99633 342 aaKnown RBP9.44□□□□□ -0.9
CPSF1-203ENST00000527916 C19orf24Q9BVV8 132 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 BEX2Q9BXY8 128 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 KLHL4Q9C0H6 718 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 OPN3Q9H1Y3 402 aaPredicted RBP9.44□□□□□ -0.9
CPSF1-203ENST00000527916 EQTNQ9NQ60 294 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 UBQLN4Q9NRR5 601 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 DUSP22Q9NRW4 184 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 SIRT3Q9NTG7 399 aaPredicted RBP9.44□□□□□ -0.9
CPSF1-203ENST00000527916 ATAD3AQ9NVI7 634 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 FLRT3Q9NZU0 649 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 STOML1Q9UBI4 398 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 LAMP3Q9UQV4 416 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 ZNF337Q9Y3M9 751 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 AP4B1Q9Y6B7 739 aa9.44□□□□□ -0.9
CPSF1-203ENST00000527916 A0A087WZY1 265 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 A0A1W2PQD3 144 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 OR2M5A3KFT3 312 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 C17orf51A8MQB3 221 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 BIRC5O15392 142 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 NDUFB5O43674 189 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 OXSR1O95747 527 aaPredicted RBP9.43□□□□□ -0.9
CPSF1-203ENST00000527916 TGM6O95932 706 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 TUBBP07437 444 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 ALOX5P09917 674 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 CD8BP10966 210 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 ACP2P11117 423 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 ZNF17P17021 662 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 PRPS1L1P21108 318 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 CLDN15P56746 228 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 SIRPAP78324 504 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 EMX2Q04743 252 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 MAD2L1Q13257 205 aaPredicted RBP9.43□□□□□ -0.9
CPSF1-203ENST00000527916 DUSP5Q16690 384 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 GRAMD1BQ3KR37 738 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 LSM12Q3MHD2 195 aaKnown RBP9.43□□□□□ -0.9
CPSF1-203ENST00000527916 CPTPQ5TA50 214 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 IL23RQ5VWK5 629 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 RAET1LQ5VY80 246 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 ANKRD34AQ69YU3 496 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 EXOC3L1Q86VI1 746 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 NUDCD3Q8IVD9 361 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 MISPQ8IVT2 679 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 RIMKLAQ8IXN7 391 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 KIRREL3Q8IZU9 778 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 SLC9A6Q92581 669 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 FAM120BQ96EK7 910 aaKnown RBP9.43□□□□□ -0.9
CPSF1-203ENST00000527916 BTBD2Q9BX70 525 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 PARD6BQ9BYG5 372 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 PIGUQ9H490 435 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 FANCFQ9NPI8 374 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 ZCCHC3Q9NUD5 404 aaKnown RBP9.43□□□□□ -0.9
CPSF1-203ENST00000527916 ASIC5Q9NY37 505 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 RAB21Q9UL25 225 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.43□□□□□ -0.9
CPSF1-203ENST00000527916 ZNF175Q9Y473 711 aa9.43□□□□□ -0.9
CPSF1-203ENST00000527916 PRR14LQ5THK1 2151 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 ALPK2Q86TB3 2170 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 UQCRHLA0A096LP55 91 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 C7orf72A4D263 438 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 TM9SF1O15321 606 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 RGS16O15492 202 aaPredicted RBP9.42□□□□□ -0.9
CPSF1-203ENST00000527916 KLF4O43474 513 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 HMGN2P05204 90 aaKnown RBP9.42□□□□□ -0.9
CPSF1-203ENST00000527916 KRT16P08779 473 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 DHRS4L1P0CG22 281 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 LAMP1P11279 417 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 THBS2P35442 1172 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 KIR2DL2P43627 348 aaPredicted RBP9.42□□□□□ -0.9
CPSF1-203ENST00000527916 RFX3P48380 749 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 CCT3P49368 545 aaKnown RBP9.42□□□□□ -0.9
CPSF1-203ENST00000527916 SUCLG1P53597 346 aaKnown RBP9.42□□□□□ -0.9
CPSF1-203ENST00000527916 CLDN8P56748 225 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 RPS3AP61247 264 aaKnown RBP9.42□□□□□ -0.9
CPSF1-203ENST00000527916 ZNF844Q08AG5 666 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 STX5Q13190 355 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 KRT71Q3SY84 523 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 TNFAIP8L3Q5GJ75 292 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 CDC73Q6P1J9 531 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 MTERF4Q7Z6M4 381 aaKnown RBP9.42□□□□□ -0.9
CPSF1-203ENST00000527916 CROCCP2Q86T23 111 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 LRRC34Q8IZ02 419 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 METTL25Q8N6Q8 603 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 FNDC5Q8NAU1 212 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 OR7A2PQ8NGA2 310 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 AGR3Q8TD06 166 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 MOAP1Q96BY2 351 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 TUBGCP3Q96CW5 907 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 C16orf58Q96GQ5 468 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 BHLHE41Q9C0J9 482 aaPredicted RBP9.42□□□□□ -0.9
CPSF1-203ENST00000527916 HOXD1Q9GZZ0 328 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 RNF122Q9H9V4 155 aa9.42□□□□□ -0.9
CPSF1-203ENST00000527916 PAQR5Q9NXK6 330 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms