RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	DUX1	O43812	170 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	TPST2	O60704	377 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	ANXA3	P12429	323 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	NT5E	P21589	574 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	MDH2	P40926	338 aa	Known RBP	3.35	□□□□□ -1.87
CD44-223	ENST00000526553	ARHGDIA	P52565	204 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	SLC25A1	P53007	311 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	METAP1	P53582	386 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	HAND2	P61296	217 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	CNTN2	Q02246	1040 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	PAX2	Q02962	417 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	RAB35	Q15286	201 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	MICA	Q29983	383 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	TTC23	Q5W5X9	447 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	KRTAP5-4	Q6L8H1	288 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	SCYL2	Q6P3W7	929 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	HACD2	Q6Y1H2	254 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	GCNT7	Q6ZNI0	430 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	DPY19L4	Q7Z388	723 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	TMEM17	Q86X19	198 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	ZNF679	Q8IYX0	411 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	EIF1AD	Q8N9N8	165 aa	Known RBP	3.35	□□□□□ -1.87
CD44-223	ENST00000526553	EMG1	Q92979	244 aa	Known RBP	3.35	□□□□□ -1.87
CD44-223	ENST00000526553	ZBTB18	Q99592	522 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	TCHP	Q9BT92	498 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	SLC25A51	Q9H1U9	297 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	VCX2	Q9H322	139 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	RNF41	Q9H4P4	317 aa	Predicted RBP	3.35	□□□□□ -1.87
CD44-223	ENST00000526553	GPN2	Q9H9Y4	310 aa	Predicted RBP	3.35	□□□□□ -1.87
CD44-223	ENST00000526553	ZNF275	Q9NSD4	429 aa	Predicted RBP	3.35	□□□□□ -1.87
CD44-223	ENST00000526553	MRPL39	Q9NYK5	338 aa	Known RBP	3.35	□□□□□ -1.87
CD44-223	ENST00000526553	NYAP2	Q9P242	653 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	SMC3	Q9UQE7	1217 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	GSTK1	Q9Y2Q3	226 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	GMPPB	Q9Y5P6	360 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	SLCO1B1	Q9Y6L6	691 aa		3.35	□□□□□ -1.87
CD44-223	ENST00000526553	PPRC1	Q5VV67	1664 aa	Known RBP	3.34	□□□□□ -1.87
CD44-223	ENST00000526553	PCP4L1	A6NKN8	68 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	CCT8L1P	A6NM43	557 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	CCDC169	A6NNP5	214 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	ANKHD1-EIF4EBP3	H7C0V5	636 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-223	ENST00000526553	UBXN8	O00124	270 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	CASK	O14936	926 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	ZSCAN12	O43309	604 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	OR1F1	O43749	312 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	STX11	O75558	287 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	IGHV3-9	P01782	118 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	TPM2	P07951	284 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	ZNF44	P15621	663 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	NTHL1	P78549	312 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	CXCL6	P80162	114 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	PJVK	Q0ZLH3	352 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	ATXN7L3	Q14CW9	347 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-223	ENST00000526553	UBE2V2	Q15819	145 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	GSG1	Q2KHT4	349 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	EXOC3L2	Q2M3D2	409 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	TMEM225	Q6GV28	225 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	PARG	Q86W56	976 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	ERICH1	Q86X53	443 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	ANKFN1	Q8N957	763 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	ZNF671	Q8TAW3	534 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	CTNNBL1	Q8WYA6	563 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-223	ENST00000526553	SDSL	Q96GA7	329 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	DHTKD1	Q96HY7	919 aa	Predicted RBP	3.34	□□□□□ -1.87
CD44-223	ENST00000526553	C7orf34	Q96L11	122 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	ZIM3	Q96PE6	472 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	CCT8L2	Q96SF2	557 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	KRTAP4-4	Q9BYR3	166 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	RBM28	Q9NW13	759 aa	Known RBP	3.34	□□□□□ -1.87
CD44-223	ENST00000526553	DCAF16	Q9NXF7	216 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	CRLS1	Q9UJA2	301 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	RPH3AL	Q9UNE2	315 aa		3.34	□□□□□ -1.87
CD44-223	ENST00000526553	WRN	Q14191	1432 aa	Predicted RBP eCLIP	3.34	□□□□□ -1.88
CD44-223	ENST00000526553	ATP10D	Q9P241	1426 aa		3.34	□□□□□ -1.88
CD44-223	ENST00000526553	TOP2B	Q02880	1626 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	IGHV3-35	A0A0C4DH35	117 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	FAM220BP	B1ANY3	271 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	NPIPA7	E9PJI5	369 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	PPIH	O43447	177 aa	Known RBP	3.33	□□□□□ -1.88
CD44-223	ENST00000526553	TRIM3	O75382	744 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-223	ENST00000526553	GJB5	O95377	273 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	H2AFZ	P0C0S5	128 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	NPIPA8	P0DM63	369 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	DBT	P11182	482 aa	Known RBP	3.33	□□□□□ -1.88
CD44-223	ENST00000526553	PGAM2	P15259	253 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	ZNF19	P17023	458 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	TBXA2R	P21731	343 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	CALB2	P22676	271 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	PAX7	P23759	505 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	GDF1	P27539	372 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	MAGEA9	P43362	315 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	RGR	P47804	291 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	CEBPD	P49716	269 aa	Predicted RBP	3.33	□□□□□ -1.88
CD44-223	ENST00000526553	PLA2G16	P53816	162 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	RPS6	P62753	249 aa	Known RBP	3.33	□□□□□ -1.88
CD44-223	ENST00000526553	BDH1	Q02338	343 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	NCBP1	Q09161	790 aa	Known RBP	3.33	□□□□□ -1.88
CD44-223	ENST00000526553	TGIF1	Q15583	401 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	ZNF79	Q15937	498 aa		3.33	□□□□□ -1.88
CD44-223	ENST00000526553	SYPL1	Q16563	259 aa		3.33	□□□□□ -1.88

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