RNA–Protein interactions for RNA: ENST00000526271.2

CPSF1-201, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 697 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-201ENST00000526271 TRIM46Q7Z4K8 759 aa12.68□□□□□ -0.38
CPSF1-201ENST00000526271 OR2T11Q8NH01 316 aa12.68□□□□□ -0.38
CPSF1-201ENST00000526271 OSTF1Q92882 214 aa12.68□□□□□ -0.38
CPSF1-201ENST00000526271 SH3YL1Q96HL8 342 aaPredicted RBP12.68□□□□□ -0.38
CPSF1-201ENST00000526271 PKNOX2Q96KN3 472 aa12.68□□□□□ -0.38
CPSF1-201ENST00000526271 FCRL1Q96LA6 429 aa12.68□□□□□ -0.38
CPSF1-201ENST00000526271 TBL1XR1Q9BZK7 514 aa12.68□□□□□ -0.38
CPSF1-201ENST00000526271 TRIM2Q9C040 744 aa12.68□□□□□ -0.38
CPSF1-201ENST00000526271 C12orf65Q9H3J6 166 aaKnown RBP12.68□□□□□ -0.38
CPSF1-201ENST00000526271 ATP8B1O43520 1251 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 CD5LO43866 347 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 TMCC2O75069 709 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 SLITRK5O94991 958 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 KCNK2O95069 426 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 IFI6P09912 130 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 MYZAPP0CAP1 466 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 EFNA1P20827 205 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-201ENST00000526271 PKNOX1P55347 436 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 CTBP2P56545 445 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 FOXF1Q12946 379 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 HSPB3Q12988 150 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 ZNF239Q16600 458 aaKnown RBP12.67□□□□□ -0.38
CPSF1-201ENST00000526271 SFRP5Q5T4F7 317 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 CPTPQ5TA50 214 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 HMBOX1Q6NT76 420 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 CBLN3Q6UW01 205 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 Q6ZSR9 355 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 BEND4Q6ZU67 534 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 ESPNLQ6ZVH7 1005 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 LCA5Q86VQ0 697 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 HIPK1Q86Z02 1210 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 WDR75Q8IWA0 830 aaKnown RBP12.67□□□□□ -0.38
CPSF1-201ENST00000526271 TUSC5Q8IXB3 177 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 DTNBP1Q96EV8 351 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 TRAF4Q9BUZ4 470 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-201ENST00000526271 SHCBP1LQ9BZQ2 653 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 MID1IP1Q9NPA3 183 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 SIRT3Q9NTG7 399 aaPredicted RBP12.67□□□□□ -0.38
CPSF1-201ENST00000526271 NPAP1Q9NZP6 1156 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 DCDC2Q9UHG0 476 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 LIPT1Q9Y234 373 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 RNF115Q9Y4L5 304 aa12.67□□□□□ -0.38
CPSF1-201ENST00000526271 ARFGEF3Q5TH69 2177 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 A0A087WZY1 265 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 NPIPA5A0A0B4J1W7 369 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 SHISA9B4DS77 424 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 NPIPA7E9PJI5 369 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 GSTA1P08263 222 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 NPIPA8P0DM63 369 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 KRT4P19013 534 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 SFTPDP35247 375 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 MANFP55145 182 aaKnown RBP12.66□□□□□ -0.38
CPSF1-201ENST00000526271 ZNF117Q03924 483 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 NDUFAF6Q330K2 333 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 ZNF672Q499Z4 452 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-201ENST00000526271 SPDYAQ5MJ70 313 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.66□□□□□ -0.38
CPSF1-201ENST00000526271 HBMQ6B0K9 141 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 DNAJC14Q6Y2X3 702 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-201ENST00000526271 PIWIL2Q8TC59 973 aaKnown RBP12.66□□□□□ -0.38
CPSF1-201ENST00000526271 GPR151Q8TDV0 419 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 ACTRT2Q8TDY3 377 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 SMAP2Q8WU79 429 aaPredicted RBP12.66□□□□□ -0.38
CPSF1-201ENST00000526271 ZBTB9Q96C00 473 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 KLHL15Q96M94 604 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 PRRG4Q9BZD6 226 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 TUBB1Q9H4B7 451 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 CXorf36Q9H7Y0 433 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 PRSS50Q9UI38 385 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 MCTS1Q9ULC4 181 aaKnown RBP12.66□□□□□ -0.38
CPSF1-201ENST00000526271 ACTL7BQ9Y614 415 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 KCNE3Q9Y6H6 103 aa12.66□□□□□ -0.38
CPSF1-201ENST00000526271 IGHV4-30-2A0A087WSY4 118 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 IGHV3-15A0A0B4J1V0 119 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 RNF212BA8MTL3 300 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 CLOCKO15516 846 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 NDUFB5O43674 189 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 PLGP00747 810 aaPredicted RBP12.65□□□□□ -0.38
CPSF1-201ENST00000526271 PRPS2P11908 318 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 ENPP1P22413 925 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 PRPH2P23942 346 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 ADH6P28332 368 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 NTSP30990 170 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 CRHR1P34998 444 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 GSTM5P46439 218 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 CCT5P48643 541 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 BSPH1Q075Z2 132 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 FAPQ12884 760 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 PDE7AQ13946 482 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 AGBL2Q5U5Z8 902 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 FRMD7Q6ZUT3 714 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.65□□□□□ -0.38
CPSF1-201ENST00000526271 LILRA2Q8N149 483 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 BANPQ8N9N5 519 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 ZNF75CPQ92670 426 aaPredicted RBP12.65□□□□□ -0.38
CPSF1-201ENST00000526271 FBXW5Q969U6 566 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 ZBTB8AQ96BR9 441 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 TLCD1Q96CP7 247 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 MIEF1Q9NQG6 463 aa12.65□□□□□ -0.38
CPSF1-201ENST00000526271 GLRX2Q9NS18 164 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 81.8 ms