RNA–Protein interactions for RNA: ENST00000514901.5

NUP54-216, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 500 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-216ENST00000514901 OR8J3Q8NGG0 315 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 ZG16BQ96DA0 208 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 TREX2Q9BQ50 279 aaPredicted RBP12.95□□□□□ -0.34
NUP54-216ENST00000514901 PIGQQ9BRB3 760 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 TP63Q9H3D4 680 aaPredicted RBP12.95□□□□□ -0.34
NUP54-216ENST00000514901 EFCAB1Q9HAE3 211 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 SPRR3Q9UBC9 169 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 STOML1Q9UBI4 398 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 KCNE5Q9UJ90 142 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 PRDM4Q9UKN5 801 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 ZNF232Q9UNY5 417 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 AP3M1Q9Y2T2 418 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 HRH3Q9Y5N1 445 aa12.95□□□□□ -0.34
NUP54-216ENST00000514901 MED12Q93074 2177 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 CLEC18AA5D8T8 446 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 FIGNL2A6NMB9 653 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 AHRRA9YTQ3 701 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 B4DXG7 233 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 E9PLN8 166 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 LRRTM2O43300 516 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 WDR1O75083 606 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 BCHEP06276 602 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 NUDT7P0C024 238 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 ARAFP10398 606 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 ESRRAP11474 423 aaPredicted RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 GABRA1P14867 456 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 IL7RP16871 459 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 BMP7P18075 431 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 RPS4Y1P22090 263 aaKnown RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 SLC6A2P23975 617 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 EIF1P41567 113 aaKnown RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 ZNF41P51814 821 aaPredicted RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 GFRA1P56159 465 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 CDK6Q00534 326 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 ZNF117Q03924 483 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 CRYZQ08257 329 aaKnown RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 RBBP4Q09028 425 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 LARS2Q15031 903 aaKnown RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 MAPK14Q16539 360 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 C1QL3Q5VWW1 255 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 TMEM211Q6ICI0 200 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 NANOGP8Q6NSW7 305 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 REEP3Q6NUK4 255 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 CLEC18BQ6UXF7 455 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 OLIG3Q7RTU3 272 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 SERPINA11Q86U17 422 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 CD163Q86VB7 1156 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 SLC30A8Q8IWU4 369 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 CLEC18CQ8NCF0 446 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 OR5W2Q8NH69 310 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 BBS10Q8TAM1 723 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 ZBTB8AQ96BR9 441 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 ARSGQ96EG1 525 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 TMEM19Q96HH6 336 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 SH3YL1Q96HL8 342 aaPredicted RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 SFXN2Q96NB2 322 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 LRRC37BQ96QE4 947 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 TIMP4Q99727 224 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 VKORC1Q9BQB6 163 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 SPATA9Q9BWV2 254 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 UGT2B28Q9BY64 529 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 IKZF5Q9H5V7 419 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 ARMC7Q9H6L4 198 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 RUBCNLQ9H714 662 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 KAT8Q9H7Z6 458 aaKnown RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 NANOGQ9H9S0 305 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 ICAM5Q9UMF0 924 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 CARD8Q9Y2G2 431 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 SLC6A5Q9Y345 797 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 IFT52Q9Y366 437 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 L3MBTL1Q9Y468 752 aa12.94□□□□□ -0.34
NUP54-216ENST00000514901 USP9XQ93008 2570 aaPredicted RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 SPTBN1Q01082 2364 aaKnown RBP12.94□□□□□ -0.34
NUP54-216ENST00000514901 DSPPQ9NZW4 1301 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 C7orf72A4D263 438 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 C17orf51A8MQB3 221 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 CCL21O00585 134 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 AGFG2O95081 481 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 PGM3O95394 542 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 THBS1P07996 1170 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 PEPDP12955 493 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 NID1P14543 1247 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 ETS2P15036 469 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 CPN1P15169 458 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 ZNF17P17021 662 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 PGM1P36871 562 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 ART3Q13508 389 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 CBFBQ13951 182 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 CAPRIN1Q14444 709 aaKnown RBP12.93□□□□□ -0.34
NUP54-216ENST00000514901 BCL2A1Q16548 175 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 CYP51A1Q16850 503 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 RAET1LQ5VY80 246 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 ARPINQ7Z6K5 226 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 KRT73Q86Y46 540 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 TREML1Q86YW5 311 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 POU5F2Q8N7G0 328 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 C11orf65Q8NCR3 313 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 OR52P1PQ8NH57 321 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 WDR60Q8WVS4 1066 aa12.93□□□□□ -0.34
NUP54-216ENST00000514901 MAL2Q969L2 176 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms