RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 KLK8O60259 260 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PCDHGA12O60330 932 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 KCNK5O95279 499 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GBX2P52951 348 aaPredicted RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RAB5BP61020 215 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNHIT3Q15649 155 aaPredicted RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FCRLBQ6BAA4 426 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZCCHC12Q6PEW1 402 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ALKAL2Q6UX46 152 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TMEM92Q6UXU6 159 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR51A7Q8NH64 312 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 S100PBPQ96BU1 408 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC6A18Q96N87 628 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR2A14Q96R47 310 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CPPED1Q9BRF8 314 aaPredicted RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DOHHQ9BU89 302 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CNIH4Q9P003 139 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 WDR45Q9Y484 360 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NYNRINQ9P2P1 1898 aaKnown RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GTPBP1O00178 669 aaKnown RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 EML2O95834 649 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RAF1P04049 648 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CHMP24386 653 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GGT2P36268 569 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RPS19P39019 145 aaKnown RBP10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 BCL6P41182 706 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SMSP52788 366 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TEKQ02763 1124 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RIPPLY1Q0D2K3 151 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 BTN2A1Q7KYR7 527 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TMEM179BQ7Z7N9 219 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR9A4Q8NGU2 314 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TTC9Q92623 222 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 P2RX2Q9UBL9 471 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PSORS1C1Q9UIG5 152 aa10.07□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TCRBV5S2A0A599 114 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 YY2O15391 372 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 IFNGR2P38484 337 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GPR4P46093 362 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 AP3S2P59780 193 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PPP1CAP62136 330 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SNTB2Q13425 540 aaKnown RBP10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ASAH1Q13510 395 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FAM111BQ6SJ93 734 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CDK20Q8IZL9 346 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CSNK1A1LQ8N752 337 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 AVL9Q8NBF6 648 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR56A3Q8NH54 315 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 IFT27Q9BW83 186 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NT5DC2Q9H857 520 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GPR34Q9UPC5 381 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 NOTCH4Q99466 2003 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 H1F0P07305 194 aaKnown RBP10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 IGFBP1P08833 259 aaPredicted RBP10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CD6P30203 668 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GABRA3P34903 492 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TAS2R38P59533 333 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FLI1Q01543 452 aaPredicted RBP10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 METRNLQ641Q3 311 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PLAG1Q6DJT9 500 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TMEM64Q6YI46 380 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SSX6Q7RTT6 188 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MSRB3Q8IXL7 192 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ENTHD1Q8IYW4 607 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 PRR22Q8IZ63 422 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZNF433Q8N7K0 673 aaPredicted RBP10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR51L1Q8NGJ5 315 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OR5J2Q8NH18 312 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 RSC1A1Q92681 617 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 LIN7BQ9HAP6 207 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SDHAF2Q9NX18 166 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ZFC3H1O60293 1989 aaKnown RBP10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 hCG_1807616A0A1W2PRN6 198 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 H0YIV9 168 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARNTLO00327 626 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ARPC5O15511 151 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HPGDSO60760 199 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 GPR37L1O60883 481 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 SLC43A1O75387 559 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 REM1O75628 298 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 FOSL2P15408 326 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 BMP7P18075 431 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CNR2P34972 360 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 EPHA5P54756 1037 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CAV3P56539 151 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 EXOSC2Q13868 293 aaKnown RBP10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 OLFML2AQ68BL7 652 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TIGD3Q6B0B8 471 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TDHQ8IZJ6 230 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TCTE3Q8IZS6 198 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ATOH1Q92858 354 aaPredicted RBP10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TRAF4Q9BUZ4 470 aaPredicted RBP10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 MARK1Q9P0L2 795 aa10.06□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CUL9Q8IWT3 2517 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 DNAJC13O75165 2243 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 TGM6O95932 706 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ALPPP05187 535 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 CEACAM5P06731 702 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 HTR1AP08908 422 aa10.05□□□□□ -0.8
MSH5-SAPCD1-207ENST00000493662 ACADLP28330 430 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms