RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 LUZP2Q86TE4 346 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 CDH24Q86UP0 819 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 GGNQ86UU5 652 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 TMCO5AQ8N6Q1 288 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 TRIML2Q8N7C3 387 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 CNEP1R1Q8N9A8 125 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 CHDHQ8NE62 594 aaPredicted RBP13.59□□□□□ -0.23
USP39-217ENST00000491659 PIWIL2Q8TC59 973 aaKnown RBP13.59□□□□□ -0.23
USP39-217ENST00000491659 MIPOL1Q8TD10 442 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 FAM222BQ8WU58 562 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 FIG4Q92562 907 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 RNF145Q96MT1 663 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 CCDC115Q96NT0 180 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 SDF2Q99470 211 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 SLC35A5Q9BS91 424 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 RBM24Q9BX46 236 aaKnown RBP13.59□□□□□ -0.23
USP39-217ENST00000491659 OR51I1Q9H343 314 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 CRIM1Q9NZV1 1036 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 BTNL2Q9UIR0 455 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 DTNAQ9Y4J8 743 aa13.59□□□□□ -0.23
USP39-217ENST00000491659 ANKRD17O75179 2603 aaKnown RBP13.58□□□□□ -0.24
USP39-217ENST00000491659 TUBAL3A6NHL2 446 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 NPIPB9F8W1W9 429 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 KLF11O14901 512 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 STX11O75558 287 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 IDO1P14902 403 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 ELK4P28324 431 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 CPOXP36551 454 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 EIF1P41567 113 aaKnown RBP13.58□□□□□ -0.24
USP39-217ENST00000491659 EIF1AXP47813 144 aaKnown RBP13.58□□□□□ -0.24
USP39-217ENST00000491659 RNF144AP50876 292 aaPredicted RBP13.58□□□□□ -0.24
USP39-217ENST00000491659 P2RX1P51575 399 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 CLDN15P56746 228 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 PHC1P78364 1004 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 HPCAP84074 193 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 FGFBP1Q14512 234 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 GPR68Q15743 365 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 ARHGAP11BQ3KRB8 267 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.58□□□□□ -0.24
USP39-217ENST00000491659 SAXO2Q658L1 398 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 GLB1L3Q8NCI6 653 aaPredicted RBP13.58□□□□□ -0.24
USP39-217ENST00000491659 FNDC9Q8TBE3 224 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 NEURL3Q96EH8 262 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 ZNF845Q96IR2 970 aaPredicted RBP13.58□□□□□ -0.24
USP39-217ENST00000491659 TEX37Q96LM6 180 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 PANX1Q96RD7 426 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 PRRG4Q9BZD6 226 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 NMUR2Q9GZQ4 415 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 ARGLU1Q9NWB6 273 aaPredicted RBP13.58□□□□□ -0.24
USP39-217ENST00000491659 PAQR5Q9NXK6 330 aaPredicted RBP13.58□□□□□ -0.24
USP39-217ENST00000491659 GALNT8Q9NY28 637 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 CARD8Q9Y2G2 431 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 GPR45Q9Y5Y3 372 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 ANKHD1Q8IWZ3 2542 aaKnown RBP13.58□□□□□ -0.24
USP39-217ENST00000491659 PDZD2O15018 2839 aa13.58□□□□□ -0.24
USP39-217ENST00000491659 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 C9JVG2 144 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 TNFSF13O75888 250 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 SMNDC1O75940 238 aaKnown RBP eCLIP13.57□□□□□ -0.24
USP39-217ENST00000491659 PGRP06401 933 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 LINGO3P0C6S8 592 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 OR12D1P0DN82 309 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 UBL4AP11441 157 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 PSMA4P25789 261 aaKnown RBP13.57□□□□□ -0.24
USP39-217ENST00000491659 ANXA11P50995 505 aaKnown RBP13.57□□□□□ -0.24
USP39-217ENST00000491659 CCR4P51679 360 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 CASP9P55211 416 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 RAC1P63000 192 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 SIRPAP78324 504 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 FOXF1Q12946 379 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 SLC9B1Q4ZJI4 515 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 PDCD4Q53EL6 469 aaKnown RBP13.57□□□□□ -0.24
USP39-217ENST00000491659 PDSS1Q5T2R2 415 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 PDZK1Q5T2W1 519 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 TNFAIP8L2Q6P589 184 aaPredicted RBP13.57□□□□□ -0.24
USP39-217ENST00000491659 CBLN3Q6UW01 205 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 ESPNLQ6ZVH7 1005 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 GOLGA6L1Q8N7Z2 621 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 RFWD2Q8NHY2 731 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 ZNF75CPQ92670 426 aaPredicted RBP13.57□□□□□ -0.24
USP39-217ENST00000491659 ARL8AQ96BM9 186 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 MAELQ96JY0 434 aaKnown RBP13.57□□□□□ -0.24
USP39-217ENST00000491659 ATP6V1G3Q96LB4 118 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 OR52E6Q96RD3 313 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 ZNF350Q9GZX5 532 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 TMEM185BQ9H7F4 350 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 RNF122Q9H9V4 155 aa13.57□□□□□ -0.24
USP39-217ENST00000491659 MCTS1Q9ULC4 181 aaKnown RBP13.57□□□□□ -0.24
USP39-217ENST00000491659 SERINC4A6NH21 518 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 MSTNO14793 375 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 ZNF264O43296 627 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 OIP5O43482 229 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 EIF4E2O60573 245 aaKnown RBP13.56□□□□□ -0.24
USP39-217ENST00000491659 SYNGR4O95473 234 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 ADH6P28332 368 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 IL12AP29459 219 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 CBFBQ13951 182 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 ZNF141Q15928 474 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 GSTA3Q16772 222 aa13.56□□□□□ -0.24
USP39-217ENST00000491659 NDUFAF6Q330K2 333 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms