RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 WWTR1Q9GZV5 400 aa7.98□□□□□ -1.13
USP4-213ENST00000488520 CXorf36Q9H7Y0 433 aa7.98□□□□□ -1.13
USP4-213ENST00000488520 TRIM45Q9H8W5 580 aaPredicted RBP7.98□□□□□ -1.13
USP4-213ENST00000488520 IL1RL2Q9HB29 575 aa7.98□□□□□ -1.13
USP4-213ENST00000488520 FOLH1BQ9HBA9 442 aa7.98□□□□□ -1.13
USP4-213ENST00000488520 DEPPQ9NTK1 212 aa7.98□□□□□ -1.13
USP4-213ENST00000488520 THUMPD1Q9NXG2 353 aaKnown RBP7.98□□□□□ -1.13
USP4-213ENST00000488520 ARMCX1Q9P291 453 aa7.98□□□□□ -1.13
USP4-213ENST00000488520 MYOTQ9UBF9 498 aa7.98□□□□□ -1.13
USP4-213ENST00000488520 ZNF639Q9UID6 485 aa7.98□□□□□ -1.13
USP4-213ENST00000488520 CORO2BQ9UQ03 480 aa7.98□□□□□ -1.13
USP4-213ENST00000488520 A0A096LPI6 279 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 A0A0G2JNJ9 132 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 A8MVJ9 347 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 CLIC1O00299 241 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 AIM2O14862 343 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 ACOX3O15254 700 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 CTAG2O75638 210 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 OR2J2O76002 312 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 CBX7O95931 251 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 HMGN2P05204 90 aaKnown RBP7.97□□□□□ -1.13
USP4-213ENST00000488520 ZCCHC18P0CG32 403 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 HPGDP15428 266 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 ATP6V1C1P21283 382 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 DNASE1P24855 282 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 ACVR2AP27037 513 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 IL12BP29460 328 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 PRDX6P30041 224 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 CRATP43155 626 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 EMDP50402 254 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 PHC1P78364 1004 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 LTBQ06643 244 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 GNA13Q14344 377 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 LASP1Q14847 261 aaKnown RBP7.97□□□□□ -1.13
USP4-213ENST00000488520 CYP27C1Q4G0S4 372 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 ARSKQ6UWY0 536 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 IL20RBQ6UXL0 311 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 WDR53Q7Z5U6 358 aaPredicted RBP7.97□□□□□ -1.13
USP4-213ENST00000488520 SNX32Q86XE0 403 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 GPALPP1Q8IXQ4 340 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 DND1Q8IYX4 353 aaKnown RBP7.97□□□□□ -1.13
USP4-213ENST00000488520 C17orf47Q8NEP4 570 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 PSMA8Q8TAA3 256 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 XAGE5Q8WWM1 108 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 GTF2H4Q92759 462 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 NINJ1Q92982 152 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 TMCO6Q96DC7 493 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 RMND5BQ96G75 393 aaPredicted RBP7.97□□□□□ -1.13
USP4-213ENST00000488520 NSL1Q96IY1 281 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 TTYH2Q9BSA4 534 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 INPP5KQ9BT40 448 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 G6PC3Q9BUM1 346 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 ZNF385DQ9H6B1 395 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 ANKRA2Q9H9E1 313 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 TPT1P8Q9HAU6 139 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 CACYBPQ9HB71 228 aaKnown RBP7.97□□□□□ -1.13
USP4-213ENST00000488520 HPF1Q9NWY4 346 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 ALKBH4Q9NXW9 302 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 Q9UFV3 132 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 L3MBTL1Q9Y468 752 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 NPFFR2Q9Y5X5 522 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 LIPGQ9Y5X9 500 aa7.97□□□□□ -1.13
USP4-213ENST00000488520 A0A0G2JMM0 328 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 A0A1W2PPB8 328 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 A0A1W2PRS3 328 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 FRG2CA6NGY1 282 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 KIR3DP1A8MWS1 328 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 C5orf58C9J3I9 102 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 MRASO14807 208 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 PRKNO60260 465 aaPredicted RBP7.96□□□□□ -1.14
USP4-213ENST00000488520 SCN2BO60939 215 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 P04436 131 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 GLI4P10075 376 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 NAGAP17050 411 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 MAGEA8P43361 318 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 KIR2DL3P43628 341 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 RFX3P48380 749 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 KHKP50053 298 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 ADAM8P78325 824 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 POU6F2P78424 691 aaPredicted RBP7.96□□□□□ -1.14
USP4-213ENST00000488520 HPCAP84074 193 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 PLCXD2Q0VAA5 305 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 CDK5R2Q13319 367 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 GAB1Q13480 694 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 EFR3AQ14156 821 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 EBPQ15125 230 aaKnown RBP7.96□□□□□ -1.14
USP4-213ENST00000488520 COQ5Q5HYK3 327 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 PAGE3Q5JUK9 113 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 RTL6Q6ICC9 239 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 CDC73Q6P1J9 531 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 NUP54Q7Z3B4 507 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 C16orf62Q7Z3J2 963 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 DHDDSQ86SQ9 333 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 CDC20BQ86Y33 519 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 C9orf40Q8IXQ3 194 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 POU5F2Q8N7G0 328 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 COX18Q8N8Q8 333 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 PSD4Q8NDX1 1056 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 FAM13CQ8NE31 585 aa7.96□□□□□ -1.14
USP4-213ENST00000488520 OR2M7Q8NG81 312 aa7.96□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms