RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CD63P08962 238 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 ATP6V1B1P15313 513 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 DRD5P21918 477 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 GGT2P36268 569 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 FOLR3P41439 243 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 RPL5P46777 297 aaKnown RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 RFX3P48380 749 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 ESRRGP62508 458 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 RPS15P62841 145 aaKnown RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 NNATQ16517 81 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 MEP1AQ16819 746 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 C6orf141Q5SZD1 244 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 PDZK1Q5T2W1 519 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 TMEM205Q6UW68 189 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 CCDC71Q8IV32 467 aaPredicted RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 IL22RA1Q8N6P7 574 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 TOR1AIP2Q8NFQ8 470 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 OIT3Q8WWZ8 545 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 SLC38A4Q969I6 547 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 SLC35B4Q969S0 331 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 ADIPOR1Q96A54 375 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 C8orf44Q96CB5 159 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 UCK2Q9BZX2 261 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 REV1Q9UBZ9 1251 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 TESQ9UGI8 421 aaKnown RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 PCDHGA6Q9Y5G7 932 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 A0A087WUU8 490 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 A0A087WXM4 84 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 FRG2CA6NGY1 282 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 C21orf140B9A014 251 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 THY1P04216 161 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 CYC1P08574 325 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 LIPCP11150 499 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 PRG2P13727 222 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 POU2F1P14859 743 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 CRHBPP24387 322 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 HLCSP50747 726 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 ATP12AP54707 1039 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 NR1H2P55055 460 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 CDH15P55291 814 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 DCAF7P61962 342 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 HOXC5Q00444 222 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 IL5RAQ01344 420 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 FOXD4Q12950 439 aaPredicted RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 CDK5R2Q13319 367 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 TOP3AQ13472 1001 aaPredicted RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 FGFBP1Q14512 234 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 EBPQ15125 230 aaKnown RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 CD300LDQ6UXZ3 194 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 CMIPQ8IY22 773 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 AMER2Q8N7J2 671 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 OR1N1Q8NGS0 311 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 ZNF566Q969W8 418 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 LCORQ96JN0 433 aaPredicted RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 NXF5Q9H1B4 397 aaKnown RBP13.07□□□□□ -0.32
CUX1-209ENST00000487284 NTNG1Q9Y2I2 539 aa13.07□□□□□ -0.32
CUX1-209ENST00000487284 TRAPPC13A5PLN9 417 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 OR6C76A6NM76 312 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 BCAS1O75363 584 aaPredicted RBP13.06□□□□□ -0.32
CUX1-209ENST00000487284 CCDC159P0C7I6 412 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 OSMP13725 252 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 MMP11P24347 488 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 HTR2AP28223 471 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 GABARAPL2P60520 117 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 MAD2L1BPQ15013 274 aaPredicted RBP13.06□□□□□ -0.32
CUX1-209ENST00000487284 DECR1Q16698 335 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 C1orf94Q6P1W5 598 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 Q6ZPB1 254 aaPredicted RBP13.06□□□□□ -0.32
CUX1-209ENST00000487284 GDF7Q7Z4P5 450 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 C9orf40Q8IXQ3 194 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 ACOT11Q8WXI4 607 aaPredicted RBP13.06□□□□□ -0.32
CUX1-209ENST00000487284 CNOT9Q92600 299 aaKnown RBP13.06□□□□□ -0.32
CUX1-209ENST00000487284 SLC41A3Q96GZ6 507 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 WDR77Q9BQA1 342 aaPredicted RBP13.06□□□□□ -0.32
CUX1-209ENST00000487284 GPR87Q9BY21 358 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.06□□□□□ -0.32
CUX1-209ENST00000487284 COPS7AQ9UBW8 275 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 C19orf25Q9UFG5 118 aaPredicted RBP13.06□□□□□ -0.32
CUX1-209ENST00000487284 IL17BQ9UHF5 180 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 HS3ST3B1Q9Y662 390 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 MRPS18BQ9Y676 258 aaKnown RBP13.06□□□□□ -0.32
CUX1-209ENST00000487284 CACNA1AO00555 2505 aa13.06□□□□□ -0.32
CUX1-209ENST00000487284 ZFHX4Q86UP3 3567 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 C2orf92A0A1B0GVN3 265 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 ZAR1LA6NP61 321 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 SLC1A7O00341 560 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 IL33O95760 270 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 TP53P04637 393 aaPredicted RBP13.05□□□□□ -0.32
CUX1-209ENST00000487284 CHMP24386 653 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 GPR143P51810 404 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 CRISP1P54107 249 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 CXCR4P61073 352 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 COX10Q12887 443 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 TBC1D25Q3MII6 688 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 PAPD4Q6PIY7 484 aaKnown RBP13.05□□□□□ -0.32
CUX1-209ENST00000487284 CPEB2Q7Z5Q1 589 aaKnown RBP13.05□□□□□ -0.32
CUX1-209ENST00000487284 ZER1Q7Z7L7 766 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 CNIH3Q8TBE1 160 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 ZNF559Q9BR84 538 aa13.05□□□□□ -0.32
CUX1-209ENST00000487284 FAM192AQ9GZU8 254 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms