RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 TMEM45AQ9NWC5 275 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 COQ3Q9NZJ6 369 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 LIPT1Q9Y234 373 aa13.36□□□□□ -0.27
USP4-212ENST00000486549 A0A1W2PP18 115 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 OR2M5A3KFT3 312 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 AHRRA9YTQ3 701 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 PRSS44E7EML9 344 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 CLIC1O00299 241 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 ANGPT2O15123 496 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 SEC14L5O43304 696 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 BCHEP06276 602 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 CHRM4P08173 479 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 CHMP24386 653 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 PTGER4P35408 488 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 LHX2P50458 406 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 CDSNQ15517 529 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 ZNF141Q15928 474 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 MAPK14Q16539 360 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 LRIF1Q5T3J3 769 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 ARSGQ96EG1 525 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 ZNF317Q96PQ6 595 aaPredicted RBP13.35□□□□□ -0.27
USP4-212ENST00000486549 TRNT1Q96Q11 434 aaKnown RBP13.35□□□□□ -0.27
USP4-212ENST00000486549 NPAS1Q99742 590 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 RAD21L1Q9H4I0 556 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 POLE3Q9NRF9 147 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 MED17Q9NVC6 651 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 SLC25A37Q9NYZ2 338 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 KLHL14Q9P2G3 628 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 P2RX2Q9UBL9 471 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.35□□□□□ -0.27
USP4-212ENST00000486549 LEF1Q9UJU2 399 aaPredicted RBP13.35□□□□□ -0.27
USP4-212ENST00000486549 RNF6Q9Y252 685 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 NDUFAF1Q9Y375 327 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 ZNF337Q9Y3M9 751 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 L3MBTL1Q9Y468 752 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 UNC79Q9P2D8 2635 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 CACNA1CQ13936 2221 aa13.35□□□□□ -0.27
USP4-212ENST00000486549 A0A087WZY1 265 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 ZNF264O43296 627 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 CSTAP01040 98 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 HOXD4P09016 255 aaPredicted RBP13.34□□□□□ -0.27
USP4-212ENST00000486549 UBTFL6P0CB48 400 aaPredicted RBP13.34□□□□□ -0.27
USP4-212ENST00000486549 CPN1P15169 458 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 ZNF708P17019 499 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 HOXB9P17482 250 aaPredicted RBP13.34□□□□□ -0.27
USP4-212ENST00000486549 COL8A1P27658 744 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 ADH7P40394 386 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 P2RX1P51575 399 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 GYS2P54840 703 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 CLDN18P56856 261 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 SF3B4Q15427 424 aaKnown RBP eCLIP13.34□□□□□ -0.27
USP4-212ENST00000486549 RGNQ15493 299 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 PLPPR5Q32ZL2 321 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 GLYR1Q49A26 553 aaPredicted RBP13.34□□□□□ -0.27
USP4-212ENST00000486549 PLXDC2Q6UX71 529 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 LRRC74BQ6ZQY2 392 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 MSRB3Q8IXL7 192 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 CA5BP1Q8WTZ4 195 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 ZG16BQ96DA0 208 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 TUBA1CQ9BQE3 449 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 SAP130Q9H0E3 1048 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 SLC38A1Q9H2H9 487 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 VAPAQ9P0L0 249 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 ICAM5Q9UMF0 924 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 HEATR5AQ86XA9 2040 aa13.34□□□□□ -0.27
USP4-212ENST00000486549 A0A0G2JNJ9 132 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 TMEM247A6NEH6 219 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 FAM90A27PA6NNH2 459 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 H0YC42 278 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 CLDN14O95500 239 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 EPPINO95925 133 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 GUSBP08236 651 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 SNRPB2P08579 225 aaKnown RBP13.33□□□□□ -0.28
USP4-212ENST00000486549 NUDT7P0C024 238 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 PEPDP12955 493 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 ZNF17P17021 662 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 MAGEA8P43361 318 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 TPD52P55327 224 aaPredicted RBP13.33□□□□□ -0.28
USP4-212ENST00000486549 FOXF1Q12946 379 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 SKP2Q13309 424 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 FGFBP1Q14512 234 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 MAPK11Q15759 364 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 RPS26P11Q5JNZ5 115 aaPredicted RBP13.33□□□□□ -0.28
USP4-212ENST00000486549 SP5Q6BEB4 398 aaPredicted RBP13.33□□□□□ -0.28
USP4-212ENST00000486549 ZNF787Q6DD87 383 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 SEM1Q6ZVN7 128 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 EIF3MQ7L2H7 374 aaKnown RBP13.33□□□□□ -0.28
USP4-212ENST00000486549 DHDDSQ86SQ9 333 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 LACC1Q8IV20 430 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 MEIOBQ8N635 442 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 TOR1AIP2Q8NFQ8 470 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 C10orf82Q8WW14 230 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 ASB5Q8WWX0 329 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 ZBTB8AQ96BR9 441 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 RNF145Q96MT1 663 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 THUMPD3Q9BV44 507 aaKnown RBP13.33□□□□□ -0.28
USP4-212ENST00000486549 FAM107BQ9H098 131 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 Q9UFV3 132 aa13.33□□□□□ -0.28
USP4-212ENST00000486549 NOTCH2Q04721 2471 aa13.32□□□□□ -0.28
USP4-212ENST00000486549 TRBV5-3A0A0A0MS03 114 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms