RNA–Protein interactions for RNA: ENST00000484954.1

VPS50-216, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 594 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-216ENST00000484954 RIPK2O43353 540 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 NDUFA7O95182 113 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 CENPBP07199 599 aaPredicted RBP1.72□□□□□ -2.13
VPS50-216ENST00000484954 GNPDA1P46926 289 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 SUCLG1P53597 346 aaKnown RBP1.72□□□□□ -2.13
VPS50-216ENST00000484954 TSPO2Q5TGU0 170 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 IL23RQ5VWK5 629 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 ACP7Q6ZNF0 438 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 NEK11Q8NG66 645 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 M1APQ8TC57 530 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 KRT35Q92764 455 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 ELMO2Q96JJ3 720 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 MCHR1Q99705 422 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 COMMD4Q9H0A8 199 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 MAGT1Q9H0U3 335 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 POLR3FQ9H1D9 316 aaPredicted RBP1.72□□□□□ -2.13
VPS50-216ENST00000484954 SLC25A51Q9H1U9 297 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 TRPV5Q9NQA5 729 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 IL20RAQ9UHF4 553 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 PLA2G4CQ9UP65 541 aa1.72□□□□□ -2.13
VPS50-216ENST00000484954 A0A096LNJ9 63 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 E9PMD0 336 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 H3BTX0 84 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 SGK494L7N484 410 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 KLF8O95600 359 aaPredicted RBP1.71□□□□□ -2.14
VPS50-216ENST00000484954 CXCL10P02778 98 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 GSTT2P0CG29 244 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 GSTT2BP0CG30 244 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 DLSTP36957 453 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 RPA4Q13156 261 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 NSDHLQ15738 373 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 LY6EQ16553 131 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 OR8G2PQ6IF36 304 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 LRRC31Q6UY01 552 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 LINC01561Q8N1V8 128 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 PSMA8Q8TAA3 256 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 EXOC6Q8TAG9 804 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 FAM151AQ8WW52 585 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 TMEM158Q8WZ71 300 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 CYP2S1Q96SQ9 504 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 SRXN1Q9BYN0 137 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 NMNAT2Q9BZQ4 307 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 C1orf123Q9NWV4 160 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 P2RX2Q9UBL9 471 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 TRIM10Q9UDY6 481 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 PHF11Q9UIL8 331 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 ANGPTL2Q9UKU9 493 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 DNPEPQ9ULA0 475 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 SMC3Q9UQE7 1217 aa1.71□□□□□ -2.14
VPS50-216ENST00000484954 HIVEP2P31629 2446 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 TRBV2A0A0J9YWF9 115 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 RNF222A6NCQ9 220 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 FCN1O00602 326 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 ZNF780AO75290 641 aaPredicted RBP1.7□□□□□ -2.14
VPS50-216ENST00000484954 ALPPL2P10696 532 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 ANXA3P12429 323 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 BCKDHAP12694 445 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 MTTPP55157 894 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 PRPS1P60891 318 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 CSNK1G2P78368 415 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 ACTN3Q08043 901 aaPredicted RBP1.7□□□□□ -2.14
VPS50-216ENST00000484954 NEK5Q6P3R8 708 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 ARSKQ6UWY0 536 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 TMEM26Q6ZUK4 368 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 LINC01551Q86U37 167 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 IQCA1Q86XH1 822 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 TMEM61Q8N0U2 210 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 ZSCAN4Q8NAM6 433 aaPredicted RBP1.7□□□□□ -2.14
VPS50-216ENST00000484954 CCNYQ8ND76 341 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 RAB7BQ96AH8 199 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 UPRTQ96BW1 309 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 NFKBIZQ9BYH8 718 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 PPDPFQ9H3Y8 114 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 MID1IP1Q9NPA3 183 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 RBAKQ9NYW8 714 aaPredicted RBP1.7□□□□□ -2.14
VPS50-216ENST00000484954 HMG20BQ9P0W2 317 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 PRPF19Q9UMS4 504 aaKnown RBP1.7□□□□□ -2.14
VPS50-216ENST00000484954 UGT2A1Q9Y4X1 527 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 NEUROG3Q9Y4Z2 214 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 COL1A2P08123 1366 aa1.7□□□□□ -2.14
VPS50-216ENST00000484954 TTC21BQ7Z4L5 1316 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 IGLV4-60A0A075B6I1 120 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 KIR2DL5BA0A0G2JN68 375 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 KIR2DL5BA0A0G2JPC4 375 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 A0A0G2JRQ6 117 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 IGHV3-64DA0A0J9YX35 117 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 HSFX4A0A1B0GTS1 333 aaPredicted RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 HSFX3A0A1B0GWH4 333 aaPredicted RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 FAM74A7A6NL05 159 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 LRRC30A6NM36 301 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 GFYI3L273 518 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 FAM189A1O60320 539 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 OR10H3O60404 316 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 MOSP00540 346 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 THRBP10828 461 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 EPHX2P34913 555 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 HSPA1LP34931 641 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 RPS9P46781 194 aaKnown RBP1.69□□□□□ -2.14
VPS50-216ENST00000484954 HERVK_113P61574 105 aa1.69□□□□□ -2.14
VPS50-216ENST00000484954 SLAQ13239 276 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms