RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 OR4N2Q8NGD1 307 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 OR2T11Q8NH01 316 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 MBD3L2Q8NHZ7 208 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 Q8TCH9 128 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 ZPLD1Q8TCW7 415 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 TCP10LQ8TDR4 215 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 AENQ8WTP8 325 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 TWIST2Q8WVJ9 160 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 CAVIN3Q969G5 261 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 GFM2Q969S9 779 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 CIDECQ96AQ7 238 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 ZBED6CLQ96FA7 236 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 EGLN2Q96KS0 407 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 FCRL1Q96LA6 429 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 TSSK3Q96PN8 268 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 TM9SF2Q99805 663 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 LMF2Q9BU23 707 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 MECRQ9BV79 373 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 TUBB1Q9H4B7 451 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 REEP4Q9H6H4 257 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 C3orf14Q9HBI5 128 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 SDHAF3Q9NRP4 125 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 SLC17A7Q9P2U7 560 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 C11orf21Q9P2W6 132 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF629Q9UEG4 869 aaPredicted RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 FBXL2Q9UKC9 423 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 ABCG2Q9UNQ0 655 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 MRPS18CQ9Y3D5 142 aaKnown RBP6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 L3MBTL1Q9Y468 752 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 TRAF6Q9Y4K3 522 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 DNAJC15Q9Y5T4 150 aa6.16□□□□□ -1.42
CCDC88A-213ENST00000476903 OTOGQ6ZRI0 2925 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 KDM4EB2RXH2 506 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 TMEM114B3SHH9 223 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 TMEM233B4DJY2 109 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 SYT5O00445 386 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 PIP5K1BO14986 540 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 AKAP10O43572 662 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 SCO2O43819 266 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 TBX19O60806 448 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 PEX14O75381 377 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 ZWINTO95229 277 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 KCNH1O95259 989 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 SLU7O95391 586 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 IL33O95760 270 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 IL18BPO95998 194 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 TMIGD3P0DMS9 266 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 PRPS2P11908 318 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 CHMP24386 653 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 CTSSP25774 331 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 DPP4P27487 766 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 UQCRC1P31930 480 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 GABRA3P34903 492 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 OPRM1P35372 400 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 HPCAL1P37235 193 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 RPL3P39023 403 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 KIR2DL3P43628 341 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 LHX2P50458 406 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF136P52737 540 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 MANFP55145 182 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 GFRA1P56159 465 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 DLX5P56178 289 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 DSCR4P56555 118 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 KRTAP10-9P60411 292 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 SRYQ05066 204 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 GAB1Q13480 694 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 PDE7AQ13946 482 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 UGT3A2Q3SY77 523 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 FBXL19-AS1Q494R0 122 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 GALNTL6Q49A17 601 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 VPS26BQ4G0F5 336 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 RFTN2Q52LD8 501 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 ARSKQ6UWY0 536 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 LRIG3Q6UXM1 1119 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 ZNF551Q7Z340 670 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 SZRD1Q7Z422 152 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 R3HCC1LQ7Z5L2 792 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 TMEM200AQ86VY9 491 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 CDRT4Q8N9R6 151 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 C9orf106Q8NAJ2 232 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 CEP70Q8NHQ1 597 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 CLHC1Q8NHS4 586 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 AGR3Q8TD06 166 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 RNASE6Q93091 150 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 MTERF3Q96E29 417 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 PPP3R2Q96LZ3 170 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 SFXN2Q96NB2 322 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 ZFP3Q96NJ6 502 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 MS4A4EQ96PG1 132 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 SH3GL2Q99962 352 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 TUBA1CQ9BQE3 449 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 MEGF9Q9H1U4 602 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 PTGES2Q9H7Z7 377 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 HHATLQ9HCP6 504 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 EQTNQ9NQ60 294 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 ACSS1Q9NUB1 689 aaPredicted RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 FAM120CQ9NX05 1096 aaKnown RBP6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 SH3BP4Q9P0V3 963 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 BAIAP2L1Q9UHR4 511 aa6.15□□□□□ -1.42
CCDC88A-213ENST00000476903 RPH3AQ9Y2J0 694 aaPredicted RBP6.15□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms