RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TMCC2O75069 709 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GCM2O75603 506 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SOX30O94993 753 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SLU7O95391 586 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OPN1LWP04000 364 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 EFNA1P20827 205 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 AGTR1P30556 359 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ADSLP30566 484 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 EIF1P41567 113 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 KCNJ5P48544 419 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PRIM2P49643 509 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 C21orf58P58505 322 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 POU6F2P78424 691 aaPredicted RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF117Q03924 483 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CAPRIN1Q14444 709 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GALNTL6Q49A17 601 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SLC25A53Q5H9E4 307 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 BEX5Q5H9J7 111 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 C6orf136Q5SQH8 315 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 AP1ARQ63HQ0 302 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CDC73Q6P1J9 531 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CBLN3Q6UW01 205 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 BEND4Q6ZU67 534 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 P3H2Q8IVL5 708 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 COX18Q8N8Q8 333 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CCDC63Q8NA47 563 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 B4GALNT2Q8NHY0 566 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 FBXO30Q8TB52 745 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GPR119Q8TDV5 335 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 RNF128Q8TEB7 428 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 NUDT8Q8WV74 236 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZC3HAV1LQ96H79 300 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 APOPT1Q96IL0 206 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 KLHL15Q96M94 604 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CCL19Q99731 98 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CXorf36Q9H7Y0 433 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 UBTD1Q9HAC8 227 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GIMAP2Q9UG22 337 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 MCTS1Q9ULC4 181 aaKnown RBP10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GPR52Q9Y2T5 361 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 FIS1Q9Y3D6 152 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 KCNE3Q9Y6H6 103 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PLCE1Q9P212 2302 aa10.93□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ABCA1O95477 2261 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ALPK2Q86TB3 2170 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SONP18583 2426 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 FAM171A2A8MVW0 826 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SCDO00767 359 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CHEK2O96017 543 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PLAUP00749 431 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 NUDT17P0C025 328 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ELK4P28324 431 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CCT3P49368 545 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF41P51814 821 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CTBP2P56545 445 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CARD18P57730 90 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 LASP1Q14847 261 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PTGR1Q14914 329 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF239Q16600 458 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 EXOC3L2Q2M3D2 409 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HBMQ6B0K9 141 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ADAM5Q6NVV9 412 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 YTHDF3Q7Z739 585 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 LILRA2Q8N149 483 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GABRG1Q8N1C3 465 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 NATD1Q8N6N6 113 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 LILRB1Q8NHL6 650 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OR5P2Q8WZ92 322 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 CDS1Q92903 461 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 OTUB1Q96FW1 271 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SH3YL1Q96HL8 342 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PPP3R2Q96LZ3 170 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 Q96MF0 132 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 BDH2Q9BUT1 245 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 MECRQ9BV79 373 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ACTRT3Q9BYD9 372 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SRXN1Q9BYN0 137 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PRRG4Q9BZD6 226 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 HOXD1Q9GZZ0 328 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF395Q9H8N7 513 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 GP6Q9HCN6 339 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZCCHC3Q9NUD5 404 aaKnown RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SLC17A7Q9P2U7 560 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 LGALS13Q9UHV8 139 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZDHHC2Q9UIJ5 367 aa10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ING1Q9UK53 422 aaPredicted RBP10.92□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 RTTNQ86VV8 2226 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 DNHD1Q96M86 4753 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SMIM23A6NLE4 172 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TMEM114B3SHH9 223 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 H7C1Q1 480 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 ZNF195O14628 629 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 LYPLA1O75608 230 aaPredicted RBP10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 SYNGR4O95473 234 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 TUBBP07437 444 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 THBS1P07996 1170 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 RPL3P39023 403 aaKnown RBP10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 PTH2RP49190 550 aa10.91□□□□□ -0.66
MSH5-SAPCD1-205ENST00000476085 P2RX1P51575 399 aa10.91□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms