RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 CRATP43155 626 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 P2RX1P51575 399 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 RPS3AP61247 264 aaKnown RBP12.85□□□□□ -0.35
VAMP4-203ENST00000474047 IRX1P78414 480 aaPredicted RBP12.85□□□□□ -0.35
VAMP4-203ENST00000474047 ZNF117Q03924 483 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 SGCBQ16585 318 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 AGKQ53H12 422 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.85□□□□□ -0.35
VAMP4-203ENST00000474047 HEPHL1Q6MZM0 1159 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 SEM1Q6ZVN7 128 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 OLIG3Q7RTU3 272 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 TOR1AIP2Q8NFQ8 470 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 WNT2BQ93097 391 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 SIKE1Q9BRV8 207 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 ZNF350Q9GZX5 532 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 MED4Q9NPJ6 270 aa12.85□□□□□ -0.35
VAMP4-203ENST00000474047 A0A0G2JND7 137 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 MBD3L4A6NDZ8 208 aaPredicted RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 MBD3L3A6NE82 208 aaPredicted RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 TMEM247A6NEH6 219 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 MBD3L5A6NJ08 208 aaPredicted RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 NPIPB9F8W1W9 429 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 C19orf84I3L1E1 186 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 HMGN4O00479 90 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 EIF4E2O60573 245 aaKnown RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 TNFRSF21O75509 655 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 TOXO94900 526 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 CSTAP01040 98 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 TMIGD3P0DMS9 266 aaPredicted RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 TROVE2P10155 538 aaKnown RBP eCLIP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 ZNF17P17021 662 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 CEACAM8P31997 349 aaPredicted RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 EIF1P41567 113 aaKnown RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 SUMO3P55854 103 aaPredicted RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 SQLEQ14534 574 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 ZNF141Q15928 474 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 PLPPR5Q32ZL2 321 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 NDUFAF6Q330K2 333 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 PPP4R4Q6NUP7 873 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 SLC2A7Q6PXP3 512 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 MEX3BQ6ZN04 569 aaKnown RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 EIF3MQ7L2H7 374 aaKnown RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 LIX1LQ8IVB5 337 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 ZNF619Q8N2I2 560 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 MBD3L2Q8NHZ7 208 aaPredicted RBP12.84□□□□□ -0.35
VAMP4-203ENST00000474047 ZFP90Q8TF47 636 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 RNF145Q96MT1 663 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 TPT1P8Q9HAU6 139 aa12.84□□□□□ -0.35
VAMP4-203ENST00000474047 UGT2B17O75795 530 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 H6PDO95479 791 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 VIMP08670 466 aaKnown RBP12.83□□□□□ -0.36
VAMP4-203ENST00000474047 ZCCHC18P0CG32 403 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 CTSSP25774 331 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 OPRM1P35372 400 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 MRPL19P49406 292 aaKnown RBP12.83□□□□□ -0.36
VAMP4-203ENST00000474047 ATP4BP51164 291 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 CBFBQ13951 182 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 COX20Q5RI15 118 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 TYW3Q6IPR3 259 aaKnown RBP12.83□□□□□ -0.36
VAMP4-203ENST00000474047 BLOC1S3Q6QNY0 202 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 CBLN3Q6UW01 205 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 GTPBP8Q8N3Z3 284 aaPredicted RBP12.83□□□□□ -0.36
VAMP4-203ENST00000474047 C9orf106Q8NAJ2 232 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 INTS12Q96CB8 462 aaKnown RBP12.83□□□□□ -0.36
VAMP4-203ENST00000474047 SPDL1Q96EA4 605 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 TRNT1Q96Q11 434 aaKnown RBP12.83□□□□□ -0.36
VAMP4-203ENST00000474047 PINK1Q9BXM7 581 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 PRRG4Q9BZD6 226 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 RAD21L1Q9H4I0 556 aa12.83□□□□□ -0.36
VAMP4-203ENST00000474047 CACYBPQ9HB71 228 aaKnown RBP12.83□□□□□ -0.36
VAMP4-203ENST00000474047 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.83□□□□□ -0.36
VAMP4-203ENST00000474047 ZNF629Q9UEG4 869 aaPredicted RBP12.83□□□□□ -0.36
VAMP4-203ENST00000474047 SLC22A20A6NK97 555 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 EIF1AYO14602 144 aaKnown RBP12.82□□□□□ -0.36
VAMP4-203ENST00000474047 OIP5O43482 229 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 C1QCP02747 245 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 GUSBP08236 651 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 UBTFL6P0CB48 400 aaPredicted RBP12.82□□□□□ -0.36
VAMP4-203ENST00000474047 MAGEA8P43361 318 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 AGFG1P52594 562 aaKnown RBP12.82□□□□□ -0.36
VAMP4-203ENST00000474047 SUCLG1P53597 346 aaKnown RBP12.82□□□□□ -0.36
VAMP4-203ENST00000474047 CLDN15P56746 228 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 CLDN20P56880 219 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 CHRNEQ04844 493 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 GNA13Q14344 377 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 SYPL1Q16563 259 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 PDSS1Q5T2R2 415 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 PLXDC2Q6UX71 529 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 ANKFN1Q8N957 763 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 NAXEQ8NCW5 288 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 OR5W2Q8NH69 310 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 OIT3Q8WWZ8 545 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 GTF2H4Q92759 462 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 ZFP3Q96NJ6 502 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 LAT2Q9GZY6 243 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 SLC6A13Q9NSD5 602 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 THUMPD1Q9NXG2 353 aaKnown RBP12.82□□□□□ -0.36
VAMP4-203ENST00000474047 P2RX2Q9UBL9 471 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 ICAM5Q9UMF0 924 aa12.82□□□□□ -0.36
VAMP4-203ENST00000474047 SLC35A3Q9Y2D2 325 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms