RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 SARAFQ96BY9 339 aa10.85□□□□□ -0.67
VPS13D-204ENST00000469054 HOPXQ9BPY8 73 aaPredicted RBP10.85□□□□□ -0.67
VPS13D-204ENST00000469054 ECSITQ9BQ95 431 aa10.85□□□□□ -0.67
VPS13D-204ENST00000469054 LAT2Q9GZY6 243 aa10.85□□□□□ -0.67
VPS13D-204ENST00000469054 SPRR3Q9UBC9 169 aa10.85□□□□□ -0.67
VPS13D-204ENST00000469054 ICAM5Q9UMF0 924 aa10.85□□□□□ -0.67
VPS13D-204ENST00000469054 OSGIN2Q9Y236 505 aa10.85□□□□□ -0.67
VPS13D-204ENST00000469054 SLC35A3Q9Y2D2 325 aa10.85□□□□□ -0.67
VPS13D-204ENST00000469054 RPH3AQ9Y2J0 694 aaPredicted RBP10.85□□□□□ -0.67
VPS13D-204ENST00000469054 SLC6A5Q9Y345 797 aa10.85□□□□□ -0.67
VPS13D-204ENST00000469054 L3MBTL1Q9Y468 752 aa10.85□□□□□ -0.67
VPS13D-204ENST00000469054 A0A087WZY1 265 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 C15orf38-AP3S2A0A0A6YYH1 394 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 CLDN24A6NM45 220 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 NPIPA2E9PIF3 369 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 NPIPA3F8WFD2 350 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 BCKDKO14874 412 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 OIP5O43482 229 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 STSP08842 583 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 UBTFL6P0CB48 400 aaPredicted RBP10.84□□□□□ -0.67
VPS13D-204ENST00000469054 NID1P14543 1247 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 ETS2P15036 469 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 GCKP35557 465 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 PGM1P36871 562 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 NUDT2P50583 147 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 SUMO3P55854 103 aaPredicted RBP10.84□□□□□ -0.67
VPS13D-204ENST00000469054 SCARB2Q14108 478 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 KRT72Q14CN4 511 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 NDUFAF6Q330K2 333 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 GLYR1Q49A26 553 aaPredicted RBP10.84□□□□□ -0.67
VPS13D-204ENST00000469054 NHSL2Q5HYW2 709 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 REEP3Q6NUK4 255 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 ARSKQ6UWY0 536 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 ARPINQ7Z6K5 226 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 IFNEQ86WN2 208 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 PTOV1Q86YD1 416 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 HIPK4Q8NE63 616 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 FAM71CQ8NEG0 241 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 TOR1AIP2Q8NFQ8 470 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 FAM57AQ8TBR7 257 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 WDR60Q8WVS4 1066 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 GPATCH1Q9BRR8 931 aaKnown RBP10.84□□□□□ -0.67
VPS13D-204ENST00000469054 SPATA9Q9BWV2 254 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 CACYBPQ9HB71 228 aaKnown RBP10.84□□□□□ -0.67
VPS13D-204ENST00000469054 MED17Q9NVC6 651 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 TAGLN3Q9UI15 199 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 ACAD8Q9UKU7 415 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 ZNF232Q9UNY5 417 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 AP3M1Q9Y2T2 418 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 IFT52Q9Y366 437 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 CFAP46Q8IYW2 2715 aa10.84□□□□□ -0.67
VPS13D-204ENST00000469054 EML6Q6ZMW3 1958 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 EXPH5Q8NEV8 1989 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 TRGV8A0A0C4DH27 118 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 FAM47E-STBD1D6RA91 191 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 PRRG2O14669 202 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 BCAS1O75363 584 aaPredicted RBP10.83□□□□□ -0.68
VPS13D-204ENST00000469054 CYP7B1O75881 506 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 ACTL6AO96019 429 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 TPOP07202 933 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 THBS1P07996 1170 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 BMP7P18075 431 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 TCEA1P23193 301 aaKnown RBP10.83□□□□□ -0.68
VPS13D-204ENST00000469054 CPA2P48052 419 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 CASP6P55212 293 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 GFRA1P56159 465 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 B3GALT5-AS1P59052 145 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 KCNC4Q03721 635 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 CRYZQ08257 329 aaKnown RBP10.83□□□□□ -0.68
VPS13D-204ENST00000469054 SKP2Q13309 424 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 LARS2Q15031 903 aaKnown RBP10.83□□□□□ -0.68
VPS13D-204ENST00000469054 C3AR1Q16581 482 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 GXYLT1Q4G148 440 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 LIN52Q52LA3 116 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 RAET1LQ5VY80 246 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 VASNQ6EMK4 673 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 C8orf82Q6P1X6 216 aaPredicted RBP10.83□□□□□ -0.68
VPS13D-204ENST00000469054 AAGABQ6PD74 315 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 CALHM3Q86XJ0 350 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 VRK2Q86Y07 508 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 DOLPP1Q86YN1 238 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 SLC15A3Q8IY34 581 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 ZZZ3Q8IYH5 903 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 TMCO5AQ8N6Q1 288 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 OR5W2Q8NH69 310 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 GPR119Q8TDV5 335 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 ABTB1Q969K4 478 aaPredicted RBP10.83□□□□□ -0.68
VPS13D-204ENST00000469054 ARSGQ96EG1 525 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 SFXN2Q96NB2 322 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 ZNF583Q96ND8 569 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 TIMP4Q99727 224 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 KLHDC3Q9BQ90 382 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 PIGQQ9BRB3 760 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 UGT2B28Q9BY64 529 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 PIF1Q9H611 641 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 EXOSC3Q9NQT5 275 aaKnown RBP10.83□□□□□ -0.68
VPS13D-204ENST00000469054 ARL8BQ9NVJ2 186 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 CMTM6Q9NX76 183 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 TNFRSF10DQ9UBN6 386 aa10.83□□□□□ -0.68
VPS13D-204ENST00000469054 ANGPT4Q9Y264 503 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms