RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 C1QCP02747 245 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 CYP4B1P13584 511 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 HOXB9P17482 250 aaPredicted RBP10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 UQCRC1P31930 480 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 PTGDSP41222 190 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 CASP3P42574 277 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 RFX3P48380 749 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 CASP9P55211 416 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 TXNL4AP83876 142 aaKnown RBP10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 SNTA1Q13424 505 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 GTDC1Q4AE62 458 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 PAGE3Q5JUK9 113 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 DCST2Q5T1A1 773 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 CCNJQ5T5M9 372 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 WLSQ5T9L3 541 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 BICRALQ6AI39 1079 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 HMBOX1Q6NT76 420 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 TNFAIP8L2Q6P589 184 aaPredicted RBP10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 FIGNL1Q6PIW4 674 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 B3GNT6Q6ZMB0 384 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 CXorf67Q86X51 503 aaPredicted RBP10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 RNF130Q86XS8 419 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 NTNG2Q96CW9 530 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 Q96MF0 132 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 G6PC3Q9BUM1 346 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 OSBPL11Q9BXB4 747 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 ZNF703Q9H7S9 590 aaPredicted RBP10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 PNPLA3Q9NST1 481 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 KLRF1Q9NZS2 232 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 B4GALT7Q9UBV7 327 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 ACAD8Q9UKU7 415 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 PCDHB14Q9Y5E9 798 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 LIPGQ9Y5X9 500 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 KCNE3Q9Y6H6 103 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 CAPN7Q9Y6W3 813 aa10.81□□□□□ -0.68
SQSTM1-206ENST00000466342 ANK3Q12955 4377 aaKnown RBP10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 LRRC3CA6NJW4 275 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 ANGPT2O15123 496 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 SHOX2O60902 331 aaPredicted RBP10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 TRIM3O75382 744 aaPredicted RBP10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 AGR2O95994 175 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 AK1P00568 194 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 CELA3AP09093 270 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 RFPL3SP0C7P2 107 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 EPXP11678 715 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 GABRA1P14867 456 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 LCN1P31025 176 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 EVI2BP34910 448 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 MAGEA8P43361 318 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 ANXA11P50995 505 aaKnown RBP10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 MAPRE2Q15555 327 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 ATAD3BQ5T9A4 648 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 RTL6Q6ICC9 239 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 HEPHL1Q6MZM0 1159 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 SLC30A6Q6NXT4 461 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 ZNF585AQ6P3V2 769 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 PODNL1Q6PEZ8 512 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 PRSS57Q6UWY2 283 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 LRRC75A-AS1Q8N1F1 130 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 OR5M9Q8NGP3 310 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 PNPT1Q8TCS8 783 aaKnown RBP10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 TMEM41AQ96HV5 264 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 ZNF597Q96LX8 424 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 EXO5Q9H790 373 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 TPT1P8Q9HAU6 139 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 GALNT9Q9HCQ5 603 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 EXD2Q9NVH0 621 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 SLC25A37Q9NYZ2 338 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 VAPAQ9P0L0 249 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 ARMCX1Q9P291 453 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 ABCG2Q9UNQ0 655 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 FAM215AQ9Y5M1 114 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 PCNX3Q9H6A9 2034 aa10.8□□□□□ -0.68
SQSTM1-206ENST00000466342 SONP18583 2426 aaKnown RBP10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 TRBV5-3A0A0A0MS03 114 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 CLIC1O00299 241 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 FADS1O60427 444 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 UTS2O95399 124 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 OR12D1P0DN82 309 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 ADH7P40394 386 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 MASP1P48740 699 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 MVDP53602 400 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 GRAMD1BQ3KR37 738 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 ARHGAP11BQ3KRB8 267 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 COX20Q5RI15 118 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 FNDC7Q5VTL7 733 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 DLEU7Q6UYE1 221 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 C16orf62Q7Z3J2 963 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 PIGWQ7Z7B1 504 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 ZAR1Q86SH2 424 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 GALNT10Q86SR1 603 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 PACS2Q86VP3 889 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 RETREG3Q86VR2 466 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 MSRB3Q8IXL7 192 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 DPP10Q8N608 796 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 NEIL3Q8TAT5 605 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 XAGE5Q8WWM1 108 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 RAB8BQ92930 207 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 LRRC46Q96FV0 321 aa10.79□□□□□ -0.68
SQSTM1-206ENST00000466342 AURKBQ96GD4 344 aaPredicted RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms