RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 DUSP22Q9NRW4 184 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 BAIAP2L1Q9UHR4 511 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 FAF1Q9UNN5 650 aaPredicted RBP13.75□□□□□ -0.21
SKA3-204ENST00000462482 PTGDR2Q9Y5Y4 395 aa13.75□□□□□ -0.21
SKA3-204ENST00000462482 TRIM13O60858 407 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 FESP07332 822 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 PAX1P15863 534 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 KRT4P19013 534 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 FRKP42685 505 aaPredicted RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 RPS4XP62701 263 aaKnown RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 PDE7AQ13946 482 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 CAPRIN1Q14444 709 aaKnown RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 RFTN2Q52LD8 501 aaPredicted RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 CCNJQ5T5M9 372 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 RNF165Q6ZSG1 346 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 Q6ZSR9 355 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 C10orf107Q8IVU9 208 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 ADAMTS15Q8TE58 950 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 ROBO4Q8WZ75 1007 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 AKAP1Q92667 903 aaKnown RBP eCLIP13.74□□□□□ -0.21
SKA3-204ENST00000462482 FAM120BQ96EK7 910 aaKnown RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 OTUB1Q96FW1 271 aaPredicted RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 FCRL1Q96LA6 429 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 USB1Q9BQ65 265 aaKnown RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 TXLNGYQ9BZA5 131 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 PIGUQ9H490 435 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 ESRP2Q9H6T0 727 aaKnown RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 EML4Q9HC35 981 aaKnown RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 ZNF701Q9NV72 531 aaPredicted RBP13.74□□□□□ -0.21
SKA3-204ENST00000462482 ATAD3AQ9NVI7 634 aa13.74□□□□□ -0.21
SKA3-204ENST00000462482 CLOCKO15516 846 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 PRKD3O94806 890 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 HMGN2P05204 90 aaKnown RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 CD3EP07766 207 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 PSMA4P25789 261 aaKnown RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 ADH6P28332 368 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 SLC7A1P30825 629 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 SUMO3P55854 103 aaPredicted RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 FOXF1Q12946 379 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 LASP1Q14847 261 aaKnown RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 MLC1Q15049 377 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 ZNF239Q16600 458 aaKnown RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 LSM12Q3MHD2 195 aaKnown RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 ZAR1Q86SH2 424 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 TDRPQ86YL5 185 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 SLC43A2Q8N370 569 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 NATD1Q8N6N6 113 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 OR56A1Q8NGH5 318 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 OR2T11Q8NH01 316 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 RNF128Q8TEB7 428 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 HSD17B8Q92506 261 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 CDS1Q92903 461 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 GTPBP3Q969Y2 492 aaKnown RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 S100PBPQ96BU1 408 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 PPP3R2Q96LZ3 170 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 PRPF18Q99633 342 aaKnown RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 GATA5Q9BWX5 397 aaPredicted RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 L2HGDHQ9H9P8 463 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 GP6Q9HCN6 339 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 FBXO34Q9NWN3 711 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 GIN1Q9NXP7 522 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 KLHL13Q9P2N7 655 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 LAMP3Q9UQV4 416 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 RNF115Q9Y4L5 304 aa13.73□□□□□ -0.21
SKA3-204ENST00000462482 GPC6Q9Y625 555 aaPredicted RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 ZNF469Q96JG9 3925 aaPredicted RBP13.73□□□□□ -0.21
SKA3-204ENST00000462482 INAFM1C9JVW0 142 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 ZNF195O14628 629 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 LSM1O15116 133 aaKnown RBP13.72□□□□□ -0.21
SKA3-204ENST00000462482 SCAMP2O15127 329 aaKnown RBP13.72□□□□□ -0.21
SKA3-204ENST00000462482 PLAUP00749 431 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 LINGO3P0C6S8 592 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 BCKDHAP12694 445 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 EFNA1P20827 205 aaPredicted RBP13.72□□□□□ -0.21
SKA3-204ENST00000462482 P2RX1P51575 399 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 ZNF117Q03924 483 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 TP53BP2Q13625 1128 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 CD226Q15762 336 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 ETFDHQ16134 617 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 TMEM176BQ3YBM2 270 aaPredicted RBP13.72□□□□□ -0.21
SKA3-204ENST00000462482 KANK2Q63ZY3 851 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 FCRLAQ7L513 359 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 C4orf33Q8N1A6 199 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 TMCO5AQ8N6Q1 288 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 ZNF614Q8N883 585 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 ATP6V1C2Q8NEY4 427 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 FBXO27Q8NI29 283 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 POC1BQ8TC44 478 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 ABHD3Q8WU67 409 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 TWIST2Q8WVJ9 160 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 OR5P2Q8WZ92 322 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 KISS1RQ969F8 398 aaPredicted RBP13.72□□□□□ -0.21
SKA3-204ENST00000462482 FBXW5Q969U6 566 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 NPAS1Q99742 590 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 TMEM204Q9BSN7 226 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 ACTRT3Q9BYD9 372 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 C12orf65Q9H3J6 166 aaKnown RBP13.72□□□□□ -0.21
SKA3-204ENST00000462482 ATP6V1HQ9UI12 483 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 CARD8Q9Y2G2 431 aa13.72□□□□□ -0.21
SKA3-204ENST00000462482 DNAJC15Q9Y5T4 150 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms