RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 BBS1Q8NFJ9 593 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 OR52R1Q8NGF1 315 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 AP3S1Q92572 193 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 SLC35B4Q969S0 331 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 TMCO6Q96DC7 493 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 KLHDC7BQ96G42 594 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 ABHD8Q96I13 439 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 TXNDC15Q96J42 360 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 SECISBP2Q96T21 854 aaKnown RBP13.96□□□□□ -0.18
LDLR-202ENST00000455727 GPR174Q9BXC1 333 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 C20orf141Q9NUB4 165 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 IL20RAQ9UHF4 553 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 YARS2Q9Y2Z4 477 aaKnown RBP13.96□□□□□ -0.18
LDLR-202ENST00000455727 MED31Q9Y3C7 131 aa13.96□□□□□ -0.18
LDLR-202ENST00000455727 SDC2P34741 201 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 ATP6V1E1P36543 226 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 CD79BP40259 229 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 BDH1Q02338 343 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 PLAURQ03405 335 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 C1orf61Q13536 156 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 ZNHIT3Q15649 155 aaPredicted RBP13.95□□□□□ -0.18
LDLR-202ENST00000455727 DGAT2L6Q6ZPD8 337 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 MEPCEQ7L2J0 689 aaKnown RBP13.95□□□□□ -0.18
LDLR-202ENST00000455727 PFN4Q8NHR9 129 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 BPIFA2Q96DR5 249 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 TM9SF2Q99805 663 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 ORAI3Q9BRQ5 295 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 KATNB1Q9BVA0 655 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 ASB6Q9NWX5 421 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 SPTBN5Q9NRC6 3674 aaKnown RBP13.95□□□□□ -0.18
LDLR-202ENST00000455727 SOCS6O14544 535 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 CHP2O43745 196 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 LALBAP00709 142 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 HLA-DPB1P04440 258 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 RNH1P13489 461 aaKnown RBP13.95□□□□□ -0.18
LDLR-202ENST00000455727 BMP8BP34820 402 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 CD300CQ08708 224 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 HNRNPA0Q13151 305 aaKnown RBP13.95□□□□□ -0.18
LDLR-202ENST00000455727 GPR50Q13585 617 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 NIPAL3Q6P499 406 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 CCBE1Q6UXH8 406 aaPredicted RBP13.95□□□□□ -0.18
LDLR-202ENST00000455727 BMP8AQ7Z5Y6 402 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 ARIH2OSQ8N7S6 290 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 AVL9Q8NBF6 648 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 CHAC2Q8WUX2 184 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 ATP13A2Q9NQ11 1180 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 CMC2Q9NRP2 79 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 SIGLEC7Q9Y286 467 aa13.95□□□□□ -0.18
LDLR-202ENST00000455727 A0A0B4J2E0 115 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 A0A1B0GX12 115 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 FAM86C2PA6NEL3 165 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 TMEM221A6NGB7 291 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 CTNSO60931 367 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 SPNP16150 400 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 RBM34P42696 430 aaKnown RBP13.94□□□□□ -0.18
LDLR-202ENST00000455727 EMDP50402 254 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 IGLV3-21P80748 117 aaPredicted RBP13.94□□□□□ -0.18
LDLR-202ENST00000455727 ZNF79Q15937 498 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 GLYR1Q49A26 553 aaPredicted RBP13.94□□□□□ -0.18
LDLR-202ENST00000455727 CHCHD2P9Q5T1J5 151 aaPredicted RBP13.94□□□□□ -0.18
LDLR-202ENST00000455727 COL13A1Q5TAT6 717 aaPredicted RBP13.94□□□□□ -0.18
LDLR-202ENST00000455727 DESI1Q6ICB0 168 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 PLBD1Q6P4A8 553 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 SMARCD3Q6STE5 483 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 ZNF322Q6U7Q0 402 aaPredicted RBP13.94□□□□□ -0.18
LDLR-202ENST00000455727 SYT13Q7L8C5 426 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 ZAR1Q86SH2 424 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 ZNF595Q8IYB9 648 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 SLC43A2Q8N370 569 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 ADAMTS18Q8TE60 1221 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 HPS1Q92902 700 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 ZNF426Q9BUY5 554 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 LRRC61Q9BV99 259 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 TRIM2Q9C040 744 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 SRRQ9GZT4 340 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 FOLH1BQ9HBA9 442 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 TOR4AQ9NXH8 423 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 MUTYHQ9UIF7 546 aa13.94□□□□□ -0.18
LDLR-202ENST00000455727 SNPHO15079 494 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 PTP4A3O75365 173 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 CLEC2LP0C7M8 214 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 PAICSP22234 425 aaKnown RBP13.93□□□□□ -0.18
LDLR-202ENST00000455727 TGM4P49221 684 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 EIF2B2P49770 351 aaKnown RBP13.93□□□□□ -0.18
LDLR-202ENST00000455727 RNF144AP50876 292 aaPredicted RBP13.93□□□□□ -0.18
LDLR-202ENST00000455727 LRIT3Q3SXY7 679 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 DDI2Q5TDH0 399 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 PRPF38BQ5VTL8 546 aaKnown RBP13.93□□□□□ -0.18
LDLR-202ENST00000455727 Q6ZS52 159 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 OR8H2Q8N162 312 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 ACBD7Q8N6N7 88 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 SIRT6Q8N6T7 355 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 LSMEM1Q8N8F7 131 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 SPRYD4Q8WW59 207 aaPredicted RBP13.93□□□□□ -0.18
LDLR-202ENST00000455727 CNOT9Q92600 299 aaKnown RBP13.93□□□□□ -0.18
LDLR-202ENST00000455727 RIT1Q92963 219 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 TCTN2Q96GX1 697 aa13.93□□□□□ -0.18
LDLR-202ENST00000455727 RBM18Q96H35 190 aaKnown RBP13.93□□□□□ -0.18
LDLR-202ENST00000455727 GAS2L1Q99501 681 aaPredicted RBP13.93□□□□□ -0.18
LDLR-202ENST00000455727 ENKD1Q9H0I2 346 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms