RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 IFT46Q9NQC8 304 aa6.91□□□□□ -1.3
SYNE1-213ENST00000448038 DNAJB5O75953 348 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 HOXC4P09017 264 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-213ENST00000448038 BSGP35613 385 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 SSR4P51571 173 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 VBP1P61758 197 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 MESP2Q0VG99 397 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 VWA2Q5GFL6 755 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 TMEM71Q6P5X7 295 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 CCDC80Q76M96 950 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF627Q7L945 461 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 IGFN1Q86VF2 1251 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF547Q8IVP9 402 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 MEIOBQ8N635 442 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 OR8K3Q8NH51 312 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 NRG4Q8WWG1 115 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 TRUB1Q8WWH5 349 aaKnown RBP6.9□□□□□ -1.3
SYNE1-213ENST00000448038 BARD1Q99728 777 aaKnown RBP6.9□□□□□ -1.3
SYNE1-213ENST00000448038 CHRDQ9H2X0 955 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 TMEM38AQ9H6F2 299 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 GAPDHSO14556 408 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-213ENST00000448038 FGF17O60258 216 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 UTS2O95399 124 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 ITGA5P08648 1049 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 GM2AP17900 193 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 EIF2B2P49770 351 aaKnown RBP6.9□□□□□ -1.3
SYNE1-213ENST00000448038 TUBA1BP68363 451 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 RAB39AQ14964 217 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 ELAVL1Q15717 326 aaKnown RBP6.9□□□□□ -1.3
SYNE1-213ENST00000448038 ZNF385BQ569K4 471 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 FRMPD2BQ6IN97 320 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 TUBA1AQ71U36 451 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 SHFQ7M4L6 423 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 KLBQ86Z14 1044 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 THRSPQ92748 146 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 PMM1Q92871 262 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 TAMM41Q96BW9 452 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 CCNL2Q96S94 520 aaPredicted RBP6.9□□□□□ -1.3
SYNE1-213ENST00000448038 PDCD10Q9BUL8 212 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 ANKRD60Q9BZ19 345 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 TMEM9Q9P0T7 183 aa6.9□□□□□ -1.3
SYNE1-213ENST00000448038 PAIP2BQ9ULR5 123 aaKnown RBP6.9□□□□□ -1.3
SYNE1-213ENST00000448038 A0A1W2PQ72 361 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 DHFRP00374 187 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 CSTBP04080 98 aaKnown RBP6.9□□□□□ -1.31
SYNE1-213ENST00000448038 EPHA4P54764 986 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 ACTA2P62736 377 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 ACTG2P63267 376 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 GALK2Q01415 458 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 PDE7AQ13946 482 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 PROX2Q3B8N5 592 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 OLIG3Q7RTU3 272 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 TM9SF4Q92544 642 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 PITX2Q99697 317 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 NRSN2Q9GZP1 204 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 ABCD2Q9UBJ2 740 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 TRAV27A0A087WT01 109 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 FAM171A2A8MVW0 826 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 PAPLNO95428 1278 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 C1QAP02745 245 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 CD46P15529 392 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 RIDAP52758 137 aaKnown RBP6.9□□□□□ -1.31
SYNE1-213ENST00000448038 RRADP55042 308 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 PITPNAQ00169 270 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 KEAP1Q14145 624 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 BICRALQ6AI39 1079 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 C6orf15Q6UXA7 325 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-213ENST00000448038 SETD6Q8TBK2 473 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 STT3BQ8TCJ2 826 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 CCDC74BQ96LY2 380 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 FER1L6-AS2Q96M78 137 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 TWSG1Q9GZX9 223 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 IRF2BPLQ9H1B7 796 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 OR52D1Q9H346 318 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 PALMDQ9NP74 551 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 COMMD9Q9P000 198 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 BOKQ9UMX3 212 aaPredicted RBP6.9□□□□□ -1.31
SYNE1-213ENST00000448038 CDH10Q9Y6N8 788 aa6.9□□□□□ -1.31
SYNE1-213ENST00000448038 IDSB3KWA1 339 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 H0YIG0 161 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 MPLP40238 635 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 GABARAPL2P60520 117 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 TSPAN5P62079 268 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ERVK-25P63136 954 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 CCL7P80098 99 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 CDK5R2Q13319 367 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 MRPL49Q13405 166 aaKnown RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ARFRP1Q13795 201 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 PAQR7Q86WK9 346 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 PTRH1Q86Y79 214 aaKnown RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 KMT5CQ86Y97 462 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ANKRD53Q8N9V6 530 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 NAXEQ8NCW5 288 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 SAP130Q9H0E3 1048 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF696Q9H7X3 374 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 RLIMQ9NVW2 624 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 C2orf42Q9NWW7 574 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 TRBV2A0A0J9YWF9 115 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 TRBV4-1A0A0J9YWV2 114 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 CLCA1A8K7I4 914 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms