RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 CRISP3P54108 245 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 EEF1A1P68104 462 aaKnown RBP11.28□□□□□ -0.6
USP40-205ENST00000430158 HSF1Q00613 529 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 ZNF117Q03924 483 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 RBBP4Q09028 425 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 SKP2Q13309 424 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 SLC10A1Q14973 349 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 NDUFAF6Q330K2 333 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 EIPR1Q53HC9 387 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 REEP3Q6NUK4 255 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 COMTD1Q86VU5 262 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 MISPQ8IVT2 679 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 ARSGQ96EG1 525 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 C1GALT1C1Q96EU7 318 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 NPAS1Q99742 590 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 SH3GL1Q99961 368 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 HOPXQ9BPY8 73 aaPredicted RBP11.28□□□□□ -0.6
USP40-205ENST00000430158 LAT2Q9GZY6 243 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 SLC6A15Q9H2J7 730 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 CALML5Q9NZT1 146 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 PPP4R1LQ9P1A2 415 aa11.28□□□□□ -0.6
USP40-205ENST00000430158 GPC6Q9Y625 555 aaPredicted RBP11.28□□□□□ -0.6
USP40-205ENST00000430158 PHF3Q92576 2039 aaKnown RBP11.28□□□□□ -0.6
USP40-205ENST00000430158 CCT8L1PA6NM43 557 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 TMEM229AB2RXF0 380 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 ACOT7O00154 380 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 SUSD5O60279 629 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 EIF4E2O60573 245 aaKnown RBP11.27□□□□□ -0.61
USP40-205ENST00000430158 HCN1O60741 890 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 NID1P14543 1247 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 ETS2P15036 469 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 PSMA4P25789 261 aaKnown RBP11.27□□□□□ -0.61
USP40-205ENST00000430158 GDF1P27539 372 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 MSX1P28360 303 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 PCGF2P35227 344 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 NUDT2P50583 147 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 GFRA1P56159 465 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 DLX5P56178 289 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 PSME3P61289 254 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 KCNJ10P78508 379 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 MRPL49Q13405 166 aaKnown RBP11.27□□□□□ -0.61
USP40-205ENST00000430158 SCARB2Q14108 478 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 NHSL2Q5HYW2 709 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 ARSKQ6UWY0 536 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 Q6ZPB1 254 aaPredicted RBP11.27□□□□□ -0.61
USP40-205ENST00000430158 CCDC80Q76M96 950 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 ZNF605Q86T29 641 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 VRK2Q86Y07 508 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 SPPL2CQ8IUH8 684 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 ZNF527Q8NB42 609 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 C11orf65Q8NCR3 313 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 FAM83FQ8NEG4 500 aaPredicted RBP11.27□□□□□ -0.61
USP40-205ENST00000430158 OR52P1PQ8NH57 321 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 BBS10Q8TAM1 723 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 GPR119Q8TDV5 335 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 CNOT9Q92600 299 aaKnown RBP11.27□□□□□ -0.61
USP40-205ENST00000430158 REXO5Q96IC2 774 aaKnown RBP11.27□□□□□ -0.61
USP40-205ENST00000430158 NSL1Q96IY1 281 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 SPATA9Q9BWV2 254 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 TMEM181Q9P2C4 612 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 SPRR3Q9UBC9 169 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 SEC14L3Q9UDX4 400 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 CARD8Q9Y2G2 431 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 MED12LQ86YW9 2145 aa11.27□□□□□ -0.61
USP40-205ENST00000430158 NCOA6Q14686 2063 aaPredicted RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 DOCK7Q96N67 2140 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 INTS1Q8N201 2190 aaKnown RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 C15orf38-AP3S2A0A0A6YYH1 394 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 A0A1B0GTH9 108 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 C7orf72A4D263 438 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 CDHR4A6H8M9 788 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 AQP7O14520 342 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 ZNF264O43296 627 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 EFNA2O43921 213 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 PDE9AO76083 593 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 NTN1O95631 604 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 DBIP07108 87 aaKnown RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 THBS1P07996 1170 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 LINGO3P0C6S8 592 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 PABPC4LP0CB38 370 aaKnown RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 HPGDP15428 266 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 DPP4P27487 766 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 UQCRFS1P47985 274 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 SLC7A2P52569 658 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 SUMO3P55854 103 aaPredicted RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 DSCR4P56555 118 aaPredicted RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 ART3Q13508 389 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 GNA13Q14344 377 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 TOMM34Q15785 309 aaPredicted RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 VMACQ2NL98 169 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 GLYR1Q49A26 553 aaPredicted RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 EMC4Q5J8M3 183 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 WIPI1Q5MNZ9 446 aaPredicted RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 RNF220Q5VTB9 566 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 VASNQ6EMK4 673 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 C6orf89Q6UWU4 347 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 ZNF836Q6ZNA1 936 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 EIF3MQ7L2H7 374 aaKnown RBP11.26□□□□□ -0.61
USP40-205ENST00000430158 TRPM8Q7Z2W7 1104 aa11.26□□□□□ -0.61
USP40-205ENST00000430158 ARPINQ7Z6K5 226 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms