RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 TRIM2Q9C040 744 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 POLR2J2Q9GZM3 115 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 POLR2J3Q9H1A7 115 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 EXOSC3Q9NQT5 275 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 TESQ9UGI8 421 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 DKKL1Q9UK85 242 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 ANKRD11Q6UB99 2663 aaPredicted RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 PCSK5Q92824 1860 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 PTPRQQ9UMZ3 2332 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 IGF2RP11717 2491 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 CDHR4A6H8M9 788 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 NPIPB9F8W1W9 429 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 PEX1O43933 1283 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 CBR3O75828 277 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 SORBS2O94875 1100 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 CCL3P10147 92 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 ATP6V1B2P21281 511 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 TAS2R41P59536 307 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 EEF1A1P68104 462 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 ZNF169Q14929 603 aaPredicted RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 KPNB1Q14974 876 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 MAPK11Q15759 364 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 DUSP7Q16829 419 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 RRM2BQ7LG56 351 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 OLIG3Q7RTU3 272 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 ZAR1Q86SH2 424 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 SLC22A16Q86VW1 577 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 CARM1Q86X55 608 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 PLCZ1Q86YW0 608 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 VANGL1Q8TAA9 524 aaPredicted RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 ZG16BQ96DA0 208 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 TMEM41AQ96HV5 264 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 GMPR2Q9P2T1 348 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 CNOT11Q9UKZ1 510 aaKnown RBP9.24□□□□□ -0.93
CD44-207ENST00000425428 CARD8Q9Y2G2 431 aa9.24□□□□□ -0.93
CD44-207ENST00000425428 A0A087WZY1 265 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 ANKRD65E5RJM6 399 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 GNB5O14775 395 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 HNRNPRO43390 633 aaKnown RBP9.23□□□□□ -0.93
CD44-207ENST00000425428 NME2P1O60361 137 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 ZNF354AO60765 605 aaPredicted RBP9.23□□□□□ -0.93
CD44-207ENST00000425428 NEURL1O76050 574 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 RASAL1O95294 804 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 GP1BBP13224 206 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 NME2P22392 152 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 RYKP34925 604 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 HTR3AP46098 478 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 MAPK14Q16539 360 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 ST3GAL2Q16842 350 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 ZNF800Q2TB10 664 aaPredicted RBP eCLIP9.23□□□□□ -0.93
CD44-207ENST00000425428 COL28A1Q2UY09 1125 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 ZNF468Q5VIY5 522 aaPredicted RBP9.23□□□□□ -0.93
CD44-207ENST00000425428 DEF8Q6ZN54 512 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 PLEKHM3Q6ZWE6 761 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 GALNTL5Q7Z4T8 443 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 MDGA2Q7Z553 956 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 ZDHHC21Q8IVQ6 265 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 AMER2Q8N7J2 671 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 TEX19Q8NA77 164 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 OR5W2Q8NH69 310 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 SIGLEC12Q96PQ1 595 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 FNDC11Q9BVV2 318 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 ZFP64Q9NPA5 681 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 KRCC1Q9NPI7 259 aaPredicted RBP9.23□□□□□ -0.93
CD44-207ENST00000425428 B3GNT3Q9Y2A9 372 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 AP4S1Q9Y587 144 aa9.23□□□□□ -0.93
CD44-207ENST00000425428 SPIN1Q9Y657 262 aaPredicted RBP9.23□□□□□ -0.93
CD44-207ENST00000425428 TNRC6AQ8NDV7 1962 aaKnown RBP9.23□□□□□ -0.93
CD44-207ENST00000425428 SNPHO15079 494 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 ADAMDEC1O15204 470 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 GMFGO60234 142 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 FMO6PO60774 539 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 TRAPPC6AO75865 159 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 ZIC2O95409 532 aaPredicted RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 CRYABP02511 175 aaKnown RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 GDF1P27539 372 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 SLC7A1P30825 629 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 EIF1P41567 113 aaKnown RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 ST13P50502 369 aaKnown RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 DSCR4P56555 118 aaPredicted RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 INAQ16352 499 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 TIGD3Q6B0B8 471 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 WBP2NLQ6ICG8 309 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 VTCN1Q7Z7D3 282 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 SULF2Q8IWU5 870 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 CADM2Q8N3J6 435 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 MDS2Q8NDY4 140 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 PIK3C3Q8NEB9 887 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 OR2M7Q8NG81 312 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 DNAJA4Q8WW22 397 aaPredicted RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 UTP4Q969X6 686 aaKnown RBP9.22□□□□□ -0.93
CD44-207ENST00000425428 SDCCAG3Q96C92 435 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 MCHR1Q99705 422 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 DSN1Q9H410 356 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 PRORYQ9H606 182 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 EXO5Q9H790 373 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 GALNT9Q9HCQ5 603 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 SERINC1Q9NRX5 453 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 RLIMQ9NVW2 624 aa9.22□□□□□ -0.93
CD44-207ENST00000425428 DNAJB12Q9NXW2 375 aaKnown RBP9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms