RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ATP1A1-AS1Q5TC04 95 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 SULT1C3Q6IMI6 304 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 B3GNT6Q6ZMB0 384 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 CFAP77Q6ZQR2 320 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 ASB18Q6ZVZ8 466 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 ZNF367Q7RTV3 350 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 THOC6Q86W42 341 aaKnown RBP5.85□□□□□ -1.47
USP40-202ENST00000409945 ZNF843Q8N446 348 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 ARL6IP6Q8N6S5 226 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 C7orf57Q8NEG2 295 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 C16orf52Q8NHV5 167 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 UBE2E3Q969T4 207 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 PYCR2Q96C36 320 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 OR2A5Q96R48 311 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 CENPKQ9BS16 269 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 CDC42EP4Q9H3Q1 356 aaKnown RBP5.85□□□□□ -1.47
USP40-202ENST00000409945 AKIRIN1Q9H9L7 192 aaPredicted RBP5.85□□□□□ -1.47
USP40-202ENST00000409945 TMCO1Q9UM00 188 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 SNX5Q9Y5X3 404 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 MAU2Q9Y6X3 613 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 SPTA1P02549 2419 aa5.85□□□□□ -1.47
USP40-202ENST00000409945 SEC16AO15027 2179 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 SYNDIG1LA6NDD5 238 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 ANKDD1BA6NHY2 528 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 NCF1BA6NI72 391 aaPredicted RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 NCF1CA8MVU1 366 aaPredicted RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 KDM4EB2RXH2 506 aaPredicted RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 SUPT3HB4E1H0 165 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 H3BMH7 237 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 PSMD12O00232 456 aaPredicted RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 CDC7O00311 574 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 NDUFS4O43181 175 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 TMCC2O75069 709 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 SUPT3HO75486 399 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 STK16O75716 305 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 NSA2O95478 260 aaKnown RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 ACSL3O95573 720 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 FAM107AO95990 144 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 SHBGP04278 402 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 PRB1P04280 392 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 SPTBP11277 2137 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 NCF1P14598 390 aaPredicted RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 GNLYP22749 145 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 JAK1P23458 1154 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 ITGA3P26006 1051 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 AHRP35869 848 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 PSMB10P40306 273 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 OR1D4P47884 311 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 EMP2P54851 167 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 CSNK1G2P78368 415 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 SRSF1Q07955 248 aaKnown RBP eCLIP5.84□□□□□ -1.47
USP40-202ENST00000409945 CDC16Q13042 620 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 RBBP5Q15291 538 aaKnown RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 TGFBIQ15582 683 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 TSNQ15631 228 aaKnown RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 PRTGQ2VWP7 1150 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 SBSNQ6UWP8 590 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 GLDNQ6ZMI3 551 aaPredicted RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 MBOAT1Q6ZNC8 495 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 TMPRSS11BQ86T26 416 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 MMP21Q8N119 569 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 RIBC1Q8N443 379 aaPredicted RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 METTL27Q8N6F8 245 aaPredicted RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 LSMEM1Q8N8F7 131 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 SNX31Q8N9S9 440 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 MFSD9Q8NBP5 474 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 CAB39LQ9H9S4 337 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 ZNF71Q9NQZ8 489 aaPredicted RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 DNAJC11Q9NVH1 559 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 P4HTMQ9NXG6 502 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 NUDT4Q9NZJ9 180 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 C5AR2Q9P296 337 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 C3orf18Q9UK00 162 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 SLC22A14Q9Y267 594 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 KALRNO60229 2985 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 ATRXP46100 2492 aa5.84□□□□□ -1.47
USP40-202ENST00000409945 SNRNP200O75643 2136 aaKnown RBP5.84□□□□□ -1.47
USP40-202ENST00000409945 ATMQ13315 3056 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 COL6A6A6NMZ7 2263 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 IGKV1-8A0A0C4DH67 115 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 EXOC1LA0A1B0GW35 172 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 DNAJC9-AS1A6NH13 148 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 A6NL46 340 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 J3QKU1 62 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 VCYO14598 125 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 HCRTR1O43613 425 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 SMIM24O75264 130 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 CDH16O75309 829 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 KLF7O75840 302 aaPredicted RBP5.84□□□□□ -1.48
USP40-202ENST00000409945 CAPN1P07384 714 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 RBP1P09455 135 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 GFAPP14136 432 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 SERPINB1P30740 379 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 CLNS1AP54105 237 aaKnown RBP5.84□□□□□ -1.48
USP40-202ENST00000409945 C21orf58P58505 322 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 GPX6P59796 221 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 ITGADQ13349 1161 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 PDK4Q16654 411 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 PPP1R3AQ16821 1122 aa5.84□□□□□ -1.48
USP40-202ENST00000409945 HKDC1Q2TB90 917 aa5.84□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms