RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 PGAP2Q9UHJ9 254 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 SYN1P17600 705 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 ETV4P43268 484 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 HNRNPA3P51991 378 aaKnown RBP12.19□□□□□ -0.46
COL6A3-206ENST00000409809 HTR4Q13639 388 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 RAB33AQ14088 237 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 GALNT10Q86SR1 603 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 OR14L1PQ8NHC6 308 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 GNPNAT1Q96EK6 184 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-206ENST00000409809 TRMT2BQ96GJ1 504 aaKnown RBP12.19□□□□□ -0.46
COL6A3-206ENST00000409809 OR8D2Q9GZM6 311 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 DPEP3Q9H4B8 488 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 ACSS2Q9NR19 701 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 BLACEA4D250 179 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 DVL2O14641 736 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 GSRP00390 522 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 PLGP00747 810 aaPredicted RBP12.19□□□□□ -0.46
COL6A3-206ENST00000409809 SLC35E2BP0CK96 405 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 HNF4GQ14541 408 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 SBSNQ6UWP8 590 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 B3GNT8Q7Z7M8 397 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 MYEF2Q9P2K5 600 aaKnown RBP12.19□□□□□ -0.46
COL6A3-206ENST00000409809 RASD1Q9Y272 281 aa12.19□□□□□ -0.46
COL6A3-206ENST00000409809 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 BRINP1O60477 761 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 TAF10Q12962 218 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 CADM3Q8N126 398 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 LRRC25Q8N386 305 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 LINC01599Q8WXQ3 324 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 XYLT2Q9H1B5 865 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 UBQLN3Q9H347 655 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 ELOVL2Q9NXB9 296 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 SNRPGP15A8MWD9 76 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 CAPNS1P04632 268 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 APODP05090 189 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 SOX2P48431 317 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 SUOXP51687 545 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 EEF1A1P68104 462 aaKnown RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 EEF1A1P5Q5VTE0 462 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 TMUB2Q71RG4 321 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 SLC35F2Q8IXU6 374 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 DTWD1Q8N5C7 304 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 C1orf127Q8N9H9 656 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 TMEM163Q8TC26 289 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 C1orf74Q96LT6 269 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 PRRC1Q96M27 445 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 SLC14A2Q15849 920 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 USP50Q70EL3 339 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 TMEM125Q96AQ2 219 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 TEPSINQ96N21 525 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 OR7D2Q96RA2 312 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 NSUN3Q9H649 340 aaKnown RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 TRDV1A0A1B0GX56 115 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 IQCF5A8MTL0 148 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 TFAP2AP05549 437 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 SMIM10L2AP0DMW4 78 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 SMIM10L2BP0DMW5 78 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 CNN3Q15417 329 aaKnown RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF239Q16600 458 aaKnown RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 KDF1Q8NAX2 398 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 OR6S1Q8NH40 331 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 ZNF281Q9Y2X9 895 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 NDUFB2O95178 105 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 POU3F3P20264 500 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 BDKRB1P46663 353 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 PCBP2Q15366 365 aaKnown RBP eCLIP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 OR4K5Q8NGD3 323 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 CERKQ8TCT0 537 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 ACAD8Q9UKU7 415 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 KIAA0355O15063 1070 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 MRPL3P09001 348 aaKnown RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 HTR3AP46098 478 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 OR1E2P47887 323 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 TNFRSF17Q02223 184 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 CES4AQ5XG92 561 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 OR6N1Q8NGY5 312 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 DHRS4Q9BTZ2 278 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 NUP188Q5SRE5 1749 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 M0R143 59 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 HNF1BP35680 557 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 FAM185AQ8N0U4 392 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 LSMEM2Q8N112 164 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 NETO1Q8TDF5 533 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 PGAM5Q96HS1 289 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 SLC2A13Q96QE2 648 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 MTHFD2LQ9H903 347 aaPredicted RBP12.18□□□□□ -0.46
COL6A3-206ENST00000409809 DEC1Q9P2X7 70 aa12.18□□□□□ -0.46
COL6A3-206ENST00000409809 CACNA1SQ13698 1873 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 RAD1O60671 282 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 MT-ND4P03905 459 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 DIO3P55073 304 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 PIGFQ07326 219 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 MOGAT2Q3SYC2 334 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 ARHGAP40Q5TG30 622 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 OPN5Q6U736 354 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 SLC2A12Q8TD20 617 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 NAA11Q9BSU3 229 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-206ENST00000409809 ACTL7AQ9Y615 435 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 LOC105369274A0A096LPK9 316 aa12.17□□□□□ -0.46
COL6A3-206ENST00000409809 SMIM30A4D0T7 59 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 135.7 ms