RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 XKRXQ6PP77 449 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 CBLN3Q6UW01 205 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 DLEU7Q6UYE1 221 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 ZBTB8AQ96BR9 441 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 TTYH2Q9BSA4 534 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 MED17Q9NVC6 651 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 CALML5Q9NZT1 146 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 CARD8Q9Y2G2 431 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 L3MBTL1Q9Y468 752 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 HECTD1Q9ULT8 2610 aa19.66■□□□□ 0.74
CLN3-207ENST00000395653 NCOA6Q14686 2063 aaPredicted RBP19.65■□□□□ 0.74
CLN3-207ENST00000395653 C7orf72A4D263 438 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 FAM47E-STBD1D6RA91 191 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 TFPTP0C1Z6 253 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 ZNF708P17019 499 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 ZNF17P17021 662 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 ADSLP30566 484 aaPredicted RBP19.65■□□□□ 0.74
CLN3-207ENST00000395653 LSP1P33241 339 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 ZNF41P51814 821 aaPredicted RBP19.65■□□□□ 0.74
CLN3-207ENST00000395653 MAPK11Q15759 364 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 ACSF3Q4G176 576 aaPredicted RBP19.65■□□□□ 0.74
CLN3-207ENST00000395653 EIF3MQ7L2H7 374 aaKnown RBP19.65■□□□□ 0.74
CLN3-207ENST00000395653 TOR1AIP2Q8NFQ8 470 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 RND1Q92730 232 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 RUBCNLQ9H714 662 aa19.65■□□□□ 0.74
CLN3-207ENST00000395653 MTHFD2LQ9H903 347 aaPredicted RBP19.65■□□□□ 0.74
CLN3-207ENST00000395653 SPTBN1Q01082 2364 aaKnown RBP19.65■□□□□ 0.74
CLN3-207ENST00000395653 TMEM247A6NEH6 219 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 OIP5O43482 229 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 GLI4P10075 376 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 PEPDP12955 493 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 STARP49675 285 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 SEC24CP53992 1094 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 CRISP3P54108 245 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 CLDN18P56856 261 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 NUP107P57740 925 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 PMPCAQ10713 525 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 KLF10Q13118 480 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 GNA13Q14344 377 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 PLPPR5Q32ZL2 321 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 DHDDSQ86SQ9 333 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 RETREG3Q86VR2 466 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 GTPBP8Q8N3Z3 284 aaPredicted RBP19.64■□□□□ 0.73
CLN3-207ENST00000395653 ZPLD1Q8TCW7 415 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 SLC38A5Q8WUX1 472 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 ZG16BQ96DA0 208 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 NIPSNAP3AQ9UFN0 247 aaPredicted RBP19.64■□□□□ 0.73
CLN3-207ENST00000395653 CORO2BQ9UQ03 480 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 SLC35A3Q9Y2D2 325 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 DSPPQ9NZW4 1301 aa19.64■□□□□ 0.73
CLN3-207ENST00000395653 FLNBO75369 2602 aaKnown RBP19.63■□□□□ 0.73
CLN3-207ENST00000395653 UTP20O75691 2785 aaKnown RBP19.63■□□□□ 0.73
CLN3-207ENST00000395653 AGAP5A6NIR3 686 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 SLC22A2O15244 555 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 EPPINO95925 133 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 CSTAP01040 98 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 BCHEP06276 602 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 LINGO3P0C6S8 592 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 POU3F2P20265 443 aaPredicted RBP19.63■□□□□ 0.73
CLN3-207ENST00000395653 SKP2Q13309 424 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 MAPRE2Q15555 327 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 NDUFAF6Q330K2 333 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 FAM71CQ8NEG0 241 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 OR5W2Q8NH69 310 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 ARSGQ96EG1 525 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 KLHDC3Q9BQ90 382 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 LAT2Q9GZY6 243 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 NSRP1Q9H0G5 558 aaKnown RBP19.63■□□□□ 0.73
CLN3-207ENST00000395653 QRSL1Q9H0R6 528 aaKnown RBP19.63■□□□□ 0.73
CLN3-207ENST00000395653 A4GALTQ9NPC4 353 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 ST6GALNAC1Q9NSC7 600 aaPredicted RBP19.63■□□□□ 0.73
CLN3-207ENST00000395653 COQ3Q9NZJ6 369 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 ZNF337Q9Y3M9 751 aa19.63■□□□□ 0.73
CLN3-207ENST00000395653 EVPLLA8MZ36 301 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 H0Y3Z8 333 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 NUDT14O95848 222 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 GPX2P18283 190 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 RPS4Y1P22090 263 aaKnown RBP19.62■□□□□ 0.73
CLN3-207ENST00000395653 PGM1P36871 562 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 GYS2P54840 703 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 RUNDC3AQ59EK9 446 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 COQ5Q5HYK3 327 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 NSUN5P2Q63ZY6 315 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 SPATA21Q7Z572 469 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 LACC1Q8IV20 430 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 CMIPQ8IY22 773 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 TMCO5AQ8N6Q1 288 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 OR5M1Q8NGP8 315 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 GPR119Q8TDV5 335 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 PHF3Q92576 2039 aaKnown RBP19.62■□□□□ 0.73
CLN3-207ENST00000395653 TMEM19Q96HH6 336 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 PCNX3Q9H6A9 2034 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 AP4B1Q9Y6B7 739 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 MED12Q93074 2177 aa19.62■□□□□ 0.73
CLN3-207ENST00000395653 A1L4Q6 167 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 CD8B2A6NJW9 211 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 DNAJA2O60884 412 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 CLDN1O95832 211 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 DBIP07108 87 aaKnown RBP19.61■□□□□ 0.73
CLN3-207ENST00000395653 NUDT7P0C024 238 aa19.61■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms