RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 FAM160A2Q8N612 972 aaPredicted RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 SPRYD4Q8WW59 207 aaPredicted RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 CNOT9Q92600 299 aaKnown RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 KISS1RQ969F8 398 aaPredicted RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 SIDT1Q9NXL6 827 aaKnown RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 FLRT3Q9NZU0 649 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 CRNNQ9UBG3 495 aaPredicted RBP12.4□□□□□ -0.42
CCDC3-202ENST00000378839 CYP8B1Q9UNU6 501 aa12.4□□□□□ -0.42
CCDC3-202ENST00000378839 TDRD6O60522 2096 aaKnown RBP12.39□□□□□ -0.43
CCDC3-202ENST00000378839 A0A087WV62 115 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 A0A1W2PQL4 384 aaPredicted RBP12.39□□□□□ -0.43
CCDC3-202ENST00000378839 IL1AP01583 271 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.39□□□□□ -0.43
CCDC3-202ENST00000378839 FAM53BQ14153 422 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 EOGTQ5NDL2 527 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 SMARCD3Q6STE5 483 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 NRARPQ7Z6K4 114 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 GJD3Q8N144 294 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 COX18Q8N8Q8 333 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 OR52R1Q8NGF1 315 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 OR13C2Q8NGS9 318 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 PTP4A1Q93096 173 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 CEP19Q96LK0 163 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 PTCHD1Q96NR3 888 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 ORAI3Q9BRQ5 295 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 TMED9Q9BVK6 235 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 HDHD5Q9BXW7 423 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 TRIM45Q9H8W5 580 aaPredicted RBP12.39□□□□□ -0.43
CCDC3-202ENST00000378839 USP36Q9P275 1121 aaKnown RBP12.39□□□□□ -0.43
CCDC3-202ENST00000378839 FBXL4Q9UKA2 621 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 EXOSC1Q9Y3B2 195 aaKnown RBP12.39□□□□□ -0.43
CCDC3-202ENST00000378839 CMAHPQ9Y471 501 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 HS3ST3A1Q9Y663 406 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 TRAPPC13A5PLN9 417 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 BRINP1O60477 761 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 TNFP01375 233 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 CLUP10909 449 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 HTR1FP30939 366 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 RFX3P48380 749 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 PSG6Q00889 435 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 FHL1Q13642 323 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 ERV3-1Q14264 604 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 OR8H2Q8N162 312 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 AVL9Q8NBF6 648 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 SMRP1Q8NCR6 262 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 OR2T33Q8NG76 320 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 OTULINQ96BN8 352 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 ITPKCQ96DU7 683 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 WDFY2Q96P53 400 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 DUSP22Q9NRW4 184 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 POT1Q9NUX5 634 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 NLGN3Q9NZ94 848 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 MMP17Q9ULZ9 603 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 BOLA1Q9Y3E2 137 aa12.39□□□□□ -0.43
CCDC3-202ENST00000378839 URADA6NGE7 173 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 UNC119BA6NIH7 251 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 HRO43593 1189 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 AGR2O95994 175 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 DBIP07108 87 aaKnown RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 SPTBP11277 2137 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 LRIT3Q3SXY7 679 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TMPRSS11AQ6ZMR5 421 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 SAMD14Q8IZD0 417 aaPredicted RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TMEM99Q8N816 258 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TMEM239Q8WW34 195 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TOE1Q96GM8 510 aaKnown RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 SENP5Q96HI0 755 aaPredicted RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 SECISBP2Q96T21 854 aaKnown RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 CLDN16Q9Y5I7 305 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TRAV27A0A087WT01 109 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 SPTY2D1-AS1A0A0U1RR47 76 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 SNPHO15079 494 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 PRKNO60260 465 aaPredicted RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 CDC123O75794 336 aaPredicted RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 IFI30P13284 250 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 GABRA5P31644 462 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TMEM91Q6ZNR0 172 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 NR2C2APQ86WQ0 139 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 CDRT4Q8N9R6 151 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 FAM181AQ8N9Y4 354 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 OR51G2Q8NGK0 314 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 BRIX1Q8TDN6 353 aaKnown RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 GRHL3Q8TE85 626 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 HOXB13Q92826 284 aaPredicted RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 UFD1Q92890 307 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TXNDC15Q96J42 360 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 CCDC32Q9BV29 185 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 PPIL3Q9H2H8 161 aaKnown RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TBC1D17Q9HA65 648 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 SATB2Q9UPW6 733 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 C2orf92A0A1B0GVN3 265 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 OR5K3A6NET4 321 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 FOXS1O43638 330 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 NOS3P29474 1203 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 MAT1AQ00266 395 aaKnown RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 PDZK1Q5T2W1 519 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 CXXC5Q7LFL8 322 aaKnown RBP12.38□□□□□ -0.43
CCDC3-202ENST00000378839 TAF8Q7Z7C8 310 aa12.38□□□□□ -0.43
CCDC3-202ENST00000378839 KLBQ86Z14 1044 aa12.38□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms