RNA–Protein interactions for RNA: ENST00000354674.4

SYNE1-203, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,154 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-203ENST00000354674 LIPT1Q9Y234 373 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 SESN1Q9Y6P5 492 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 LAMA1P25391 3075 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 FEZF1A0PJY2 475 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 FAM234BA2RU67 622 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 ST8SIA5O15466 376 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 LYRM1O43325 122 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 SDC3O75056 442 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 CLEC3AO75596 197 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 HMGN1P05114 100 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 NUDT7P0C024 238 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 BCL6P41182 706 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 ARRB1P49407 418 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-203ENST00000354674 PWP1Q13610 501 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 ZNF613Q6PF04 617 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 TSPYL5Q86VY4 417 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-203ENST00000354674 PTRH1Q86Y79 214 aaKnown RBP9.42□□□□□ -0.9
SYNE1-203ENST00000354674 MFSD9Q8NBP5 474 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 SETD6Q8TBK2 473 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 MARVELD3Q96A59 401 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 IL4I1Q96RQ9 567 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 SAP130Q9H0E3 1048 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 NUDT15Q9NV35 164 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 MS4A12Q9NXJ0 267 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 CTSFQ9UBX1 484 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 GPR160Q9UJ42 338 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 LEF1Q9UJU2 399 aaPredicted RBP9.42□□□□□ -0.9
SYNE1-203ENST00000354674 RUVBL1Q9Y265 456 aaKnown RBP9.42□□□□□ -0.9
SYNE1-203ENST00000354674 MAB21L2Q9Y586 359 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 AP1M2Q9Y6Q5 423 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 SPAG17Q6Q759 2223 aa9.42□□□□□ -0.9
SYNE1-203ENST00000354674 TDRD6O60522 2096 aaKnown RBP9.42□□□□□ -0.9
SYNE1-203ENST00000354674 KLHL18O94889 574 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 TPOP07202 933 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 KLK3P07288 261 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 TRAPPC2P0DI81 140 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 TRAPPC2BP0DI82 140 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 SDC1P18827 310 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 TNFRSF1BP20333 461 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 DNASE1P24855 282 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 HTR1EP28566 365 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 EPHA8P29322 1005 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 HOXA1P49639 335 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 EPHA4P54764 986 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 CLDN8P56748 225 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 DDX39BQ13838 428 aaKnown RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 PTGR1Q14914 329 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 FCRL6Q6DN72 434 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 SLC23A3Q6PIS1 610 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 PAQR6Q6TCH4 344 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 TFAP2EQ6VUC0 442 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 BCDIN3DQ7Z5W3 292 aaKnown RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 CBLN2Q8IUK8 224 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 OR52N1Q8NH53 320 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 GPR137Q96N19 417 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 NXF2Q9GZY0 626 aaKnown RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 RAB33BQ9H082 229 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 MIXL1Q9H2W2 232 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 B3GAT2Q9NPZ5 323 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 HRASLS2Q9NWW9 162 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 PILRAQ9UKJ1 303 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 POMT2Q9UKY4 750 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 METTL21EPA6NDL7 271 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 ANKDD1BA6NHY2 528 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 DNASE2O00115 360 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 SLC16A6O15403 523 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 CHP2O43745 196 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 OR1F1O43749 312 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 ORC5O43913 435 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 UBXN7O94888 489 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 LDOC1O95751 146 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 GGT1P19440 569 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 ZP3P21754 424 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 HLA-DMAP28067 261 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 LSSP48449 732 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 NUBP1P53384 320 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 FLI1Q01543 452 aaPredicted RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 ASAH1Q13510 395 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 CLLU1Q5K131 121 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 XKRXQ6PP77 449 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 C5orf46Q6UWT4 87 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 LUZP2Q86TE4 346 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 OOSP2Q86WS3 158 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 BMPERQ8N8U9 685 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 ZFP41Q8N8Y5 198 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 OR2T35Q8NGX2 323 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 SAP25Q8TEE9 199 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 APOLD1Q96LR9 279 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 AICDAQ9GZX7 198 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 QRSL1Q9H0R6 528 aaKnown RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 CLMPQ9H6B4 373 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 SYNPO2LQ9H987 977 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 PRM3Q9NNZ6 103 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 C11orf16Q9NQ32 467 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 NLGN3Q9NZ94 848 aa9.41□□□□□ -0.9
SYNE1-203ENST00000354674 EXO1Q9UQ84 846 aaKnown RBP9.41□□□□□ -0.9
SYNE1-203ENST00000354674 SH3D21A4FU49 640 aa9.4□□□□□ -0.9
SYNE1-203ENST00000354674 NUDT21O43809 227 aaKnown RBP9.4□□□□□ -0.9
SYNE1-203ENST00000354674 HPRP00739 348 aa9.4□□□□□ -0.9
SYNE1-203ENST00000354674 TGFB1P01137 390 aa9.4□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms