RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 KLHL28Q9NXS3 571 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 IL20RAQ9UHF4 553 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 LIPT1Q9Y234 373 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 ZNF443Q9Y2A4 671 aaPredicted RBP8.44□□□□□ -1.06
USP4-202ENST00000351842 KCNMB2Q9Y691 235 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 GTF3C1Q12789 2109 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 LOC102723996A0A087X1L8 192 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 FRG2CA6NGY1 282 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 TERTO14746 1132 aaKnown RBP8.44□□□□□ -1.06
USP4-202ENST00000351842 MFN2O95140 757 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 IGHEP01854 428 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 PSMD4P55036 377 aaKnown RBP8.44□□□□□ -1.06
USP4-202ENST00000351842 ALDH6A1Q02252 535 aaKnown RBP8.44□□□□□ -1.06
USP4-202ENST00000351842 GXYLT1Q4G148 440 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 BROXQ5VW32 411 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 PLEKHM3Q6ZWE6 761 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 TMEM102Q8N9M5 508 aaPredicted RBP8.44□□□□□ -1.06
USP4-202ENST00000351842 ZNF764Q96H86 408 aaPredicted RBP8.44□□□□□ -1.06
USP4-202ENST00000351842 TSC22D3Q99576 134 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 FAM192AQ9GZU8 254 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 EXO5Q9H790 373 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 MTHFD2LQ9H903 347 aaPredicted RBP8.44□□□□□ -1.06
USP4-202ENST00000351842 S100A14Q9HCY8 104 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 A4GALTQ9NPC4 353 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 UBQLN4Q9NRR5 601 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 PPP4R1LQ9P1A2 415 aa8.44□□□□□ -1.06
USP4-202ENST00000351842 P04436 131 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 CD63P08962 238 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 ZNF24P17028 368 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 SFTPDP35247 375 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 PLGLB1Q02325 96 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 LY6DQ14210 128 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 ARSKQ6UWY0 536 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 PATL1Q86TB9 770 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 YRDCQ86U90 279 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 PYURFQ96I23 114 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 MCHR1Q99705 422 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 PKP2Q99959 881 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 ZNF350Q9GZX5 532 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 DSN1Q9H410 356 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 MMP25Q9NPA2 562 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 DCAF13Q9NV06 445 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 FBXL2Q9UKC9 423 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 MRTO4Q9UKD2 239 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 SAMD4AQ9UPU9 718 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 YARS2Q9Y2Z4 477 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 AGAP5A6NIR3 686 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 LRRN3E7EW58 273 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 PPM1BO75688 479 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 IFNW1P05000 195 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 PABPC4LP0CB38 370 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 DRD5P21918 477 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 RRM2P31350 389 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 CASRP41180 1078 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 IDH2P48735 452 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 TMED10P49755 219 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 ATP12AP54707 1039 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 RRADP55042 308 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 COPZ1P61923 177 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 SELENOWP63302 87 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 SRYQ05066 204 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 SNTA1Q13424 505 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 GNA13Q14344 377 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 MEP1AQ16819 746 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 IFI44LQ53G44 452 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 PROSER1Q86XN7 944 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 OR4K17Q8NGC6 315 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 ABHD17AQ96GS6 310 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 STACQ99469 402 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 LMF2Q9BU23 707 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 SPATA5L1Q9BVQ7 753 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 VCXQ9H320 206 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 TMEM38AQ9H6F2 299 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 SH3BGRL2Q9UJC5 107 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 RPS6KA6Q9UK32 745 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 SLC9A8Q9Y2E8 581 aa8.43□□□□□ -1.06
USP4-202ENST00000351842 SAMHD1Q9Y3Z3 626 aaKnown RBP8.43□□□□□ -1.06
USP4-202ENST00000351842 A0A0G2JPF8 293 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 PRAMEF25A6NGN4 478 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 HNRNPCL2B2RXH8 293 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 HNRNPCL3B7ZW38 293 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 H3BNH8 94 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 SEC14L5O43304 696 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 AGR2O95994 175 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 IFNA14P01570 189 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 HNRNPCL4P0DMR1 293 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 POU1F1P28069 291 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 HOXD11P31277 338 aaPredicted RBP8.42□□□□□ -1.06
USP4-202ENST00000351842 COL28A1Q2UY09 1125 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 SLC22A10Q63ZE4 541 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 TBPL2Q6SJ96 375 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 OPN5Q6U736 354 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 EIF3MQ7L2H7 374 aaKnown RBP8.42□□□□□ -1.06
USP4-202ENST00000351842 GALNT5Q7Z7M9 940 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 TSPYL5Q86VY4 417 aaPredicted RBP8.42□□□□□ -1.06
USP4-202ENST00000351842 ADGRG5Q8IZF4 528 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 GHDCQ8N2G8 530 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 ZNF527Q8NB42 609 aa8.42□□□□□ -1.06
USP4-202ENST00000351842 PSD4Q8NDX1 1056 aa8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms