RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 MED22Q15528 200 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 TSTQ16762 297 aaKnown RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 EXOSC6Q5RKV6 272 aaKnown RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 YOD1Q5VVQ6 348 aaPredicted RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 ATCAYQ86WG3 371 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 SUN5Q8TC36 379 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 CDS1Q92903 461 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 STACQ99469 402 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 MND1Q9BWT6 205 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ASPNQ9BXN1 380 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ZNF768Q9H5H4 540 aaKnown RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 CACYBPQ9HB71 228 aaKnown RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 CAPN10Q9HC96 672 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ADAP2Q9NPF8 381 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 DUSP22Q9NRW4 184 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 SLC6A14Q9UN76 642 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 SSR3Q9UNL2 185 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 RPL36Q9Y3U8 105 aaKnown RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 IRGMA1A4Y4 181 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 CCDC182A6NF36 153 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 SYT5O00445 386 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 SEC14L5O43304 696 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 CER1O95813 267 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ADAP00813 363 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 CT62P0C5K7 136 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ACP2P11117 423 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 RCVRNP35243 200 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 CRISP1P54107 249 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ASAH1Q13510 395 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 DUSP5Q16690 384 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 EXOC3L2Q2M3D2 409 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ZNF311Q5JNZ3 666 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 HSDL2Q6YN16 418 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 TTLL10Q6ZVT0 673 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 MED25Q71SY5 747 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 WDR53Q7Z5U6 358 aaPredicted RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 VWA5B2Q8N398 1253 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 CLDN22Q8N7P3 220 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 OR1L3Q8NH93 324 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 RIT1Q92963 219 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 NAT6Q93015 286 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 TMEM80Q96HE8 168 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 ZNF578Q96N58 590 aaPredicted RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 PHOX2BQ99453 314 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 DPYSL5Q9BPU6 564 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 NUDT22Q9BRQ3 303 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 PELOQ9BRX2 385 aaKnown RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 NDC1Q9BTX1 674 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 GON7Q9BXV9 100 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 RSPO3Q9BXY4 272 aaPredicted RBP11.9□□□□□ -0.5
CLK3-201ENST00000345005 RBCK1Q9BYM8 510 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 FSCN3Q9NQT6 498 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 NDOR1Q9UHB4 597 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 KCND3Q9UK17 655 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 SLC13A4Q9UKG4 626 aa11.9□□□□□ -0.5
CLK3-201ENST00000345005 LY6G6EA0A0G2JKS1 128 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 ZNF670-ZNF695F2Z2N8 137 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 ARHGAP33O14559 1287 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 ZNF749O43361 778 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 NME6O75414 186 aaPredicted RBP11.89□□□□□ -0.51
CLK3-201ENST00000345005 AK1P00568 194 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 IL1AP01583 271 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 SYPP08247 313 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 FOLR1P15328 257 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 ALAS2P22557 587 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 GALNSP34059 522 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 GRK5P34947 590 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 LIMS1P48059 325 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 PDX1P52945 283 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 SERTAD2Q14140 314 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 GANABQ14697 944 aaKnown RBP11.89□□□□□ -0.51
CLK3-201ENST00000345005 EXOSC7Q15024 291 aaKnown RBP11.89□□□□□ -0.51
CLK3-201ENST00000345005 PTGES3Q15185 160 aaKnown RBP11.89□□□□□ -0.51
CLK3-201ENST00000345005 ZNF528Q3MIS6 628 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 TMEM201Q5SNT2 666 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 TIGD3Q6B0B8 471 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 TCTN3Q6NUS6 607 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 GUSBP11Q6P575 273 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 OLIG3Q7RTU3 272 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 LIX1LQ8IVB5 337 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 GALNT12Q8IXK2 581 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 TAGAPQ8N103 731 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 METTL27Q8N6F8 245 aaPredicted RBP11.89□□□□□ -0.51
CLK3-201ENST00000345005 CELF2-AS1Q8N7Q2 184 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 C7orf57Q8NEG2 295 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 OR52J3Q8NH60 311 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 WDR36Q8NI36 951 aaKnown RBP11.89□□□□□ -0.51
CLK3-201ENST00000345005 VANGL1Q8TAA9 524 aaPredicted RBP11.89□□□□□ -0.51
CLK3-201ENST00000345005 AP3S1Q92572 193 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 PMM1Q92871 262 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 DGAT2Q96PD7 388 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 SDF2Q99470 211 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 SDHCQ99643 169 aaPredicted RBP11.89□□□□□ -0.51
CLK3-201ENST00000345005 GMEB2Q9UKD1 530 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 TMCC3Q9ULS5 477 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 MGAT4BQ9UQ53 548 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 CMAHPQ9Y471 501 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 WDR45Q9Y484 360 aa11.89□□□□□ -0.51
CLK3-201ENST00000345005 TMEM184BQ9Y519 407 aaPredicted RBP11.89□□□□□ -0.51
CLK3-201ENST00000345005 U3KQA8 63 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms