RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 P4HA3Q7Z4N8 544 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 MMP21Q8N119 569 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 OR8H2Q8N162 312 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 MEIOBQ8N635 442 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF433Q8N7K0 673 aaPredicted RBP6.4□□□□□ -1.39
SF3B1-201ENST00000335508 PNLDC1Q8NA58 520 aaKnown RBP6.4□□□□□ -1.39
SF3B1-201ENST00000335508 OR51G2Q8NGK0 314 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 SLC7A13Q8TCU3 470 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 CLDN23Q96B33 292 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 MNTQ99583 582 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 COQ3Q9NZJ6 369 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 MUTYHQ9UIF7 546 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 FLNBO75369 2602 aaKnown RBP6.4□□□□□ -1.39
SF3B1-201ENST00000335508 KHDRBS3O75525 346 aaKnown RBP6.4□□□□□ -1.39
SF3B1-201ENST00000335508 TSPAN9O75954 239 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 DHFRP00374 187 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 NUDT7P0C024 238 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 SUMO3P55854 103 aaPredicted RBP6.4□□□□□ -1.39
SF3B1-201ENST00000335508 RGS21Q2M5E4 152 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 ARL9Q6T311 187 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 KCTD20Q7Z5Y7 419 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 ST8SIA1Q92185 356 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 GPER1Q99527 375 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 MND1Q9BWT6 205 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 ITPAQ9BY32 194 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 SEC61A2Q9H9S3 476 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 DIABLOQ9NR28 239 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 FAM118AQ9NWS6 357 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 ALKBH4Q9NXW9 302 aa6.4□□□□□ -1.39
SF3B1-201ENST00000335508 ZNFX1Q9P2E3 1918 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 ANXA2P2A6NMY6 339 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 A8MVM7 634 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 TNFSF14O43557 240 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 IDH3BO43837 385 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 ANXA2P07355 339 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 CD14P08571 375 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 MYF6P23409 242 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 CDKN2CP42773 168 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 DNASE1L1P49184 302 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 LSM3P62310 102 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 RAB40BQ12829 278 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 FAM69AQ5T7M9 428 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 Q7L0L9 218 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 GALNT10Q86SR1 603 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 DTWD2Q8NBA8 298 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 TMEM80Q96HE8 168 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 LRFN5Q96NI6 719 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SDF2Q99470 211 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 OR52D1Q9H346 318 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 INPP5EQ9NRR6 644 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 WDR37Q9Y2I8 494 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 RPH3AQ9Y2J0 694 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 YARS2Q9Y2Z4 477 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 TMEM221A6NGB7 291 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 NPIPA2E9PIF3 369 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 NPIPA3F8WFD2 350 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 M0R296 226 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SLC16A6O15403 523 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 CBFA2T3O75081 653 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF432O94892 652 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 NKX2-2O95096 273 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 MT-ATP6P00846 226 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 HNRNPCP07910 306 aaKnown RBP eCLIP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 NR4A1P22736 598 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 GADD45AP24522 165 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 FPR3P25089 353 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 TMBIM6P55061 237 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 RAB25P57735 213 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 UBE2IP63279 158 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF846Q147U1 533 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 MAPK14Q16539 360 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 LIN54Q6MZP7 749 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 OGFOD3Q6PK18 319 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 GRINAQ7Z429 371 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 GALNT15Q8N3T1 639 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 THAP3Q8WTV1 239 aaPredicted RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 OR2A14Q96R47 310 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 OR6C1Q96RD1 312 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 BARD1Q99728 777 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 FAM240BA0A1B0GVZ2 78 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 OR6C65A6NJZ3 312 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 SULT2B1O00204 365 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 RNF13O43567 381 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 CHP2O43745 196 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 TNFRSF21O75509 655 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 BMP1P13497 986 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 GM2AP17900 193 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 OMPP47874 163 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 TLE3Q04726 772 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 LINC01555Q8NAE3 123 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 MRI1Q9BV20 369 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 DCSTAMPQ9H295 470 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 NPFFR2Q9Y5X5 522 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 MICAL3Q7RTP6 2002 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 DICER1Q9UPY3 1922 aaKnown RBP6.39□□□□□ -1.39
SF3B1-201ENST00000335508 LINC01387J3KSC0 135 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 PRKYO43930 277 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 MT-ND2P03891 347 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 IGHV4-34P06331 123 aa6.39□□□□□ -1.39
SF3B1-201ENST00000335508 ZNF26P17031 533 aaPredicted RBP6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms