RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 AGFG2O95081 481 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 CSTAP01040 98 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 UBTFL6P0CB48 400 aaPredicted RBP14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 ARAFP10398 606 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 BMP7P18075 431 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 P2RX1P51575 399 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 CYP51A1Q16850 503 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 EMC4Q5J8M3 183 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 DCST1Q5T197 706 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 AP1ARQ63HQ0 302 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 VASNQ6EMK4 673 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 ZNF585AQ6P3V2 769 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 PEX5LQ8IYB4 626 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 OR5M1Q8NGP8 315 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 WDR60Q8WVS4 1066 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 ABTB1Q969K4 478 aaPredicted RBP14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 LRRC58Q96CX6 371 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 GID8Q9NWU2 228 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 SUCOQ9UBS9 1254 aaKnown RBP14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 ERRFI1Q9UJM3 462 aaPredicted RBP14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 SLC35A3Q9Y2D2 325 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 FREM3P0C091 2139 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 DSPPQ9NZW4 1301 aa14.41□□□□□ -0.1
CCDC28A-201ENST00000332797 A0A087WZY1 265 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 A0A0G2JPF8 293 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 AGAP5A6NIR3 686 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 CLDN24A6NM45 220 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 HNRNPCL2B2RXH8 293 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 HNRNPCL3B7ZW38 293 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 SHISA8B8ZZ34 492 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 EIF4E2O60573 245 aaKnown RBP14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 HNRNPCL1O60812 293 aaKnown RBP14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 FAM107AO95990 144 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 ACTL6AO96019 429 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 NPPAP01160 153 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 DBIP07108 87 aaKnown RBP14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 HNRNPCL4P0DMR1 293 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 IL7RP16871 459 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 RPS4Y1P22090 263 aaKnown RBP14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 ADH7P40394 386 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 GFRA1P56159 465 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 B3GALT5-AS1P59052 145 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 CDK6Q00534 326 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 SRSF1Q07955 248 aaKnown RBP eCLIP14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 SKP2Q13309 424 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 NHSL2Q5HYW2 709 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 NANOGP8Q6NSW7 305 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 AAGABQ6PD74 315 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 FAM26EQ8N5C1 309 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 BBS10Q8TAM1 723 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 PMM1Q92871 262 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 RELTQ969Z4 430 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 TIMP4Q99727 224 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 TP63Q9H3D4 680 aaPredicted RBP14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 TMEM38AQ9H6F2 299 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 NANOGQ9H9S0 305 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 CACYBPQ9HB71 228 aaKnown RBP14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 MED17Q9NVC6 651 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 ALKBH4Q9NXW9 302 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 ICAM5Q9UMF0 924 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 CAMK2AQ9UQM7 478 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 POLEQ07864 2286 aa14.4□□□□□ -0.1
CCDC28A-201ENST00000332797 OR2M5A3KFT3 312 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 FIGNL2A6NMB9 653 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 AIM2O14862 343 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 BCAS1O75363 584 aaPredicted RBP14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 DCTN3O75935 186 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 ESRRAP11474 423 aaPredicted RBP14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 PGM1P36871 562 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 SUMO3P55854 103 aaPredicted RBP14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 KCNJ10P78508 379 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 SCARB2Q14108 478 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 PLPPR5Q32ZL2 321 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 RABL3Q5HYI8 236 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 GKAP1Q5VSY0 366 aaPredicted RBP14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 PRAMEF8Q5VWM4 474 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 PRAMEF7Q5VXH5 474 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 ENPP6Q6UWR7 440 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 VRK2Q86Y07 508 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 TOR1AIP2Q8NFQ8 470 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 OR52P1PQ8NH57 321 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 OR5W2Q8NH69 310 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 CMTM5Q96DZ9 223 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 ARSGQ96EG1 525 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 SH3GL1Q99961 368 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 PIGQQ9BRB3 760 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 LAT2Q9GZY6 243 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 KAT8Q9H7Z6 458 aaKnown RBP14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 DNAJC13O75165 2243 aa14.39□□□□□ -0.11
CCDC28A-201ENST00000332797 PGM3O95394 542 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 NID1P14543 1247 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 SLC6A2P23975 617 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 CHMP24386 653 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 STARP49675 285 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 PER3P56645 1201 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 CBFBQ13951 182 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 ADRM1Q16186 407 aa14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 GLYR1Q49A26 553 aaPredicted RBP14.38□□□□□ -0.11
CCDC28A-201ENST00000332797 LIN52Q52LA3 116 aa14.38□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms