RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 PNPOQ9NVS9 261 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 SCML1Q9UN30 329 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 POLDIP2Q9Y2S7 368 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 KCNU1A8MYU2 1149 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 AP4M1O00189 453 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 SPINK4O60575 86 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 RPA2P15927 270 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 MC4RP32245 332 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 PRTGQ2VWP7 1150 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 FAM74A1Q5RGS3 127 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 TRAPPC3LQ5T215 181 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 CDKAL1Q5VV42 579 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 TSSK4Q6SA08 328 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 SERPINA11Q86U17 422 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF761Q86XN6 746 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM183AQ8IXX5 376 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF454Q8N9F8 522 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 OR51L1Q8NGJ5 315 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 OR13C6PQ8NH95 151 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 STAG3L4Q8TBR4 150 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 MCHR2Q969V1 340 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 CDCA5Q96FF9 252 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM109Q9BVC6 243 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 GON7Q9BXV9 100 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 MS4A5Q9H3V2 200 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 IFT140Q96RY7 1462 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 IQGAP3Q86VI3 1631 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 SOCS7O14512 581 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 AOC2O75106 756 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 TUSC2O75896 110 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 H2BFMP0C1H6 154 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 ACTR1BP42025 376 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 OR10A3P58181 314 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 RIPPLY1Q0D2K3 151 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 KLF1Q13351 362 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 MRPL49Q13405 166 aaKnown RBP7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 GPR19Q15760 415 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 THSD4Q6ZMP0 1018 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 CALHM1Q8IU99 346 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 WDR20Q8TBZ3 569 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 ZBTB8AQ96BR9 441 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 OR51B6Q9H340 312 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 OCEL1Q9H607 264 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 MVB12BQ9H7P6 319 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 IL19Q9UHD0 177 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 GDF2Q9UK05 429 aaPredicted RBP7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 XDHP47989 1333 aa7.23□□□□□ -1.25
LIMCH1-201ENST00000313860 RFPL4AA6NLU0 287 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 RFPL4AL1F8VTS6 287 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 OLFM2O95897 454 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 AKAIN1P0CW23 69 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 EDNRBP24530 442 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 EPHA8P29322 1005 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 PNPLA4P41247 253 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 PRSS12P56730 875 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 RAB1AP62820 205 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 ADARB1P78563 741 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 CYCSP99999 105 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 SNTB1Q13884 538 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 PLA1AQ53H76 456 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 SLC36A1Q7Z2H8 476 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 TMEM116Q8NCL8 245 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 OR10G2Q8NGC3 310 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 OR2A1Q8NGT9 310 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 CPPED1Q9BRF8 314 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 GPR173Q9NS66 373 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 SPATA6Q9NWH7 488 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 PIM2Q9P1W9 311 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNRF3Q9ULT6 936 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 A0A1W2PN81 502 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 A0A1W2PQ67 120 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 D6RAR5 112 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 DCTN6O00399 190 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 POP4O95707 220 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 NDST3O95803 873 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 CKMT1AP12532 417 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 HOXA9P31269 272 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 CHRNA7P36544 502 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 TAF1CQ15572 869 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 KDM4DQ6B0I6 523 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 ADGRF4Q8IZF3 695 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 IL17RDQ8NFM7 739 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 CHAC2Q8WUX2 184 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 RAB1CQ92928 201 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 PGAM5Q96HS1 289 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 LYSMD1Q96S90 227 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 CNN2Q99439 309 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 C1QTNF7Q9BXJ2 289 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 MRPL37Q9BZE1 423 aaKnown RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 OR51I2Q9H344 312 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 PLSCR4Q9NRQ2 329 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 PAK1IP1Q9NWT1 392 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 ZNF443Q9Y2A4 671 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 PTCH1Q13635 1447 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 EIF3FO00303 357 aaPredicted RBP7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 DVL2O14641 736 aa7.22□□□□□ -1.25
LIMCH1-201ENST00000313860 PIAS1O75925 651 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms