RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 NNATQ16517 81 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 TP53I3Q53FA7 332 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 SERPINA11Q86U17 422 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 TMEM135Q86UB9 458 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 CSNK1A1LQ8N752 337 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF454Q8N9F8 522 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 METTL17Q9H7H0 456 aaPredicted RBP13.1□□□□□ -0.31
CSPG4-201ENST00000308508 IL37Q9NZH6 218 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 NCDNQ9UBB6 729 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 SURF4O15260 269 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 PRPH2P23942 346 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 IMPA1P29218 277 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 SH3BP2P78314 561 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 MFGE8Q08431 387 aaPredicted RBP13.1□□□□□ -0.31
CSPG4-201ENST00000308508 RGNQ15493 299 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 SLC6A19Q695T7 634 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 STRADBQ9C0K7 418 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 SLC7A7Q9UM01 511 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 C10orf71Q711Q0 1435 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 MEIS3P1A6NDR6 274 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 PPP1R2P9O14990 202 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 GSRP00390 522 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 OR10K2Q6IF99 312 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 SERINC5Q86VE9 423 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 PXT1Q8NFP0 134 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 RNF141Q8WVD5 230 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 ZDHHC7Q9NXF8 308 aa13.1□□□□□ -0.31
CSPG4-201ENST00000308508 FBXO24O75426 580 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 M6PRP20645 277 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 HTRA4P83105 476 aaPredicted RBP13.09□□□□□ -0.31
CSPG4-201ENST00000308508 SLC10A1Q14973 349 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 OR10K1Q8NGX5 313 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 MUL1Q969V5 352 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 SENP5Q96HI0 755 aaPredicted RBP13.09□□□□□ -0.31
CSPG4-201ENST00000308508 TSSK2Q96PF2 358 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 SDC3O75056 442 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 ELNP15502 786 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 HBG1P69891 147 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 HBG2P69892 147 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 VEZF1Q14119 521 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 OR4D1Q15615 310 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 SHDQ96IW2 340 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 OR10A5Q9H207 317 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 OR10A2Q9H208 303 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 FEZF1A0PJY2 475 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 ITGB2P05107 769 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 INHAP05111 366 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 MRPS34P82930 218 aaKnown RBP13.09□□□□□ -0.31
CSPG4-201ENST00000308508 RAB35Q15286 201 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 KDM8Q8N371 416 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 OR52B6Q8NGF0 335 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 CREB3L4Q8TEY5 395 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 MR1Q95460 341 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 F2RL3Q96RI0 385 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 MYADMQ96S97 322 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 IMPA2O14732 288 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 MGST1P10620 155 aaKnown RBP13.09□□□□□ -0.31
CSPG4-201ENST00000308508 ETV3P41162 512 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 SLC6A8P48029 635 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 BCL7AQ4VC05 210 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 ESCO2Q56NI9 601 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 SERPINA12Q8IW75 414 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 KCTD12Q96CX2 325 aaKnown RBP13.09□□□□□ -0.31
CSPG4-201ENST00000308508 SLC25A18Q9H1K4 315 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 A0A087WUU8 490 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 B4DXG7 233 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 KCNE1P15382 129 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 EFNA3P52797 238 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 CD163Q86VB7 1156 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 DTWD1Q8N5C7 304 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 RSPRY1Q96DX4 576 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 DPH1Q9BZG8 443 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 PDE7BQ9NP56 450 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 J3QR89 54 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 GABRR1P24046 479 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 SELPLGQ14242 412 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 C4orf36Q96KX1 117 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 INTS14Q96SY0 518 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 RIMS3Q9UJD0 308 aa13.09□□□□□ -0.31
CSPG4-201ENST00000308508 CLDN24A6NM45 220 aa13.08□□□□□ -0.31
CSPG4-201ENST00000308508 CEBPZOSA8MTT3 80 aa13.08□□□□□ -0.31
CSPG4-201ENST00000308508 HLA-DMAP28067 261 aa13.08□□□□□ -0.31
CSPG4-201ENST00000308508 CASP3P42574 277 aa13.08□□□□□ -0.31
CSPG4-201ENST00000308508 SOHLH1Q5JUK2 328 aa13.08□□□□□ -0.31
CSPG4-201ENST00000308508 ALKAL2Q6UX46 152 aa13.08□□□□□ -0.31
CSPG4-201ENST00000308508 ZNF610Q8N9Z0 462 aa13.08□□□□□ -0.31
CSPG4-201ENST00000308508 ZMYND19Q96E35 227 aaPredicted RBP13.08□□□□□ -0.31
CSPG4-201ENST00000308508 LCATP04180 440 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 NPBWR1P48145 328 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 BEX5Q5H9J7 111 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 CLECL1Q8IZS7 167 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 DNAJC5GQ8N7S2 189 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 VPS25Q9BRG1 176 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 TGIF2Q9GZN2 237 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 VRTNQ9H8Y1 702 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 COL5A2P05997 1499 aaPredicted RBP13.08□□□□□ -0.32
CSPG4-201ENST00000308508 CACNG3O60359 315 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 UGDHO60701 494 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 TNFSF8P32971 234 aa13.08□□□□□ -0.32
CSPG4-201ENST00000308508 EMX1Q04741 257 aaPredicted RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms