RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PLGP00747 810 aaPredicted RBP16.53■□□□□ 0.24
CLN3-241ENST00000635861 FGF4P08620 206 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 HPGDP15428 266 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 KRT4P19013 534 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 EIF1AXP47813 144 aaKnown RBP16.53■□□□□ 0.24
CLN3-241ENST00000635861 PRIM2P49643 509 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 ZNF41P51814 821 aaPredicted RBP16.53■□□□□ 0.24
CLN3-241ENST00000635861 CTBP2P56545 445 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 ZNF385BQ569K4 471 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 Q5PR19 223 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 CPTPQ5TA50 214 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 KANK2Q63ZY3 851 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 MFSD12Q6NUT3 480 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 NATD1Q8N6N6 113 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 UBLCP1Q8WVY7 318 aaPredicted RBP16.53■□□□□ 0.24
CLN3-241ENST00000635861 SLC9A6Q92581 669 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 ADGRG7Q96K78 797 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 MKS1Q9NXB0 559 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 SH3BP4Q9P0V3 963 aa16.53■□□□□ 0.24
CLN3-241ENST00000635861 LSM1O15116 133 aaKnown RBP16.52■□□□□ 0.23
CLN3-241ENST00000635861 AQP8O94778 261 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 SYNGR4O95473 234 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 ALOX5P09917 674 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 ME2P23368 584 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 MAPK1P28482 360 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 PRKAG1P54619 331 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 RPL38P63173 70 aaKnown RBP16.52■□□□□ 0.23
CLN3-241ENST00000635861 LTBQ06643 244 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 RFTN2Q52LD8 501 aaPredicted RBP16.52■□□□□ 0.23
CLN3-241ENST00000635861 EXOSC6Q5RKV6 272 aaKnown RBP16.52■□□□□ 0.23
CLN3-241ENST00000635861 GTF2IRD2BQ6EKJ0 949 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 BEND4Q6ZU67 534 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 GTF2IRD2Q86UP8 949 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 SLC16A11Q8NCK7 471 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 OR2T11Q8NH01 316 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 OR4C3Q8NH37 302 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 TSSK3Q96PN8 268 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 STACQ99469 402 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 CCL19Q99731 98 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 DUSP22Q9NRW4 184 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 ADAM21Q9UKJ8 722 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 DNAJC15Q9Y5T4 150 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 FREM1Q5H8C1 2179 aa16.52■□□□□ 0.23
CLN3-241ENST00000635861 A0A1W2PRB8 838 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 TMEM114B3SHH9 223 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 SCDO00767 359 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 POLR3GO15318 223 aaPredicted RBP16.51■□□□□ 0.23
CLN3-241ENST00000635861 SHBGP04278 402 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 HEXAP06865 529 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 NUDT17P0C025 328 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 ACP2P11117 423 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 PSMA4P25789 261 aaKnown RBP16.51■□□□□ 0.23
CLN3-241ENST00000635861 EIF1P41567 113 aaKnown RBP16.51■□□□□ 0.23
CLN3-241ENST00000635861 PCLAFQ15004 111 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 CTU2Q2VPK5 515 aaKnown RBP16.51■□□□□ 0.23
CLN3-241ENST00000635861 PLPPR5Q32ZL2 321 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 BEX5Q5H9J7 111 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 ANKRD26P1Q6NSI1 321 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 ZNF550Q7Z398 422 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 SZRD1Q7Z422 152 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 STK32CQ86UX6 486 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 TRABD2AQ86V40 505 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 EXOC3L1Q86VI1 746 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 C10orf107Q8IVU9 208 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 COX18Q8N8Q8 333 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 OR10D3Q8NH80 312 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 GATA5Q9BWX5 397 aaPredicted RBP16.51■□□□□ 0.23
CLN3-241ENST00000635861 TUBB1Q9H4B7 451 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 UBTD1Q9HAC8 227 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 EML4Q9HC35 981 aaKnown RBP16.51■□□□□ 0.23
CLN3-241ENST00000635861 MED17Q9NVC6 651 aa16.51■□□□□ 0.23
CLN3-241ENST00000635861 AKAP10O43572 662 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 NPHS1O60500 1241 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 PABPC4LP0CB38 370 aaKnown RBP16.5■□□□□ 0.23
CLN3-241ENST00000635861 LOXP28300 417 aaPredicted RBP16.5■□□□□ 0.23
CLN3-241ENST00000635861 ELK4P28324 431 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 ADH6P28332 368 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 HPCAL1P37235 193 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 NR1H2P55055 460 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 POU6F2P78424 691 aaPredicted RBP16.5■□□□□ 0.23
CLN3-241ENST00000635861 CASP8Q14790 479 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 DUSP5Q16690 384 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 CLEC9AQ6UXN8 241 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 OR2V1Q8NHB1 315 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 B4GALNT2Q8NHY0 566 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 COX4I2Q96KJ9 171 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 PPP3R2Q96LZ3 170 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 BDH2Q9BUT1 245 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 BTBD2Q9BX70 525 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 KLHL4Q9C0H6 718 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 HOXD1Q9GZZ0 328 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 ZNF395Q9H8N7 513 aaPredicted RBP16.5■□□□□ 0.23
CLN3-241ENST00000635861 ATP6V1HQ9UI12 483 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 PTGDR2Q9Y5Y4 395 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 PRR14LQ5THK1 2151 aa16.5■□□□□ 0.23
CLN3-241ENST00000635861 SHISA8B8ZZ34 492 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 KRT16P08779 473 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 LINC00032P0C843 101 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 PPP4R4Q6NUP7 873 aa16.49■□□□□ 0.23
CLN3-241ENST00000635861 FIGNL1Q6PIW4 674 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms