RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 RDH12Q96NR8 316 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SHARPINQ9H0F6 387 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 TUBB1Q9H4B7 451 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 VDAC3Q9Y277 283 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SULT1C2O00338 296 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 DVL2O14641 736 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 MPIG6BO95866 241 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 RAB3BP20337 219 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SEC61A1P61619 476 aaKnown RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 TAF9Q16594 264 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 C4orf17Q53FE4 359 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SPANXN4Q5MJ08 99 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SYPL2Q5VXT5 272 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 Q6ZVL8 140 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 ZNF439Q8NDP4 499 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 OCSTAMPQ9BR26 566 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 ALOXE3Q9BYJ1 711 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 TCEAL2Q9H3H9 227 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 PIGVQ9NUD9 493 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 NDRG3Q9UGV2 375 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SIT1Q9Y3P8 196 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 C4orf47A7E2U8 309 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 CKMT1AP12532 417 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 PRSS3P35030 304 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 AQP2P41181 271 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 CCL11P51671 97 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 JAM2P57087 298 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 RPS18P62269 152 aaKnown RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 TLE4Q04727 773 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 MEF2DQ14814 521 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 ECM1Q16610 540 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 MPEG1Q2M385 716 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 NCBP2-AS2Q69YL0 99 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 TECPR1Q7Z6L1 1165 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 MMP21Q8N119 569 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SYT14Q8NB59 555 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 OR8J3Q8NGG0 315 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 NPRL2Q8WTW4 380 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 INTS12Q96CB8 462 aaKnown RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 TCTN2Q96GX1 697 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 AGXT2Q9BYV1 514 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 KCNJ16Q9NPI9 418 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 LTN1O94822 1766 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 MROH2AA6NES4 1674 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 TRAPPC13A5PLN9 417 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 TSTD3H0UI37 97 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 OR10J4P0C629 311 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 ZNF888P0CJ79 500 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 DNAJB13P59910 316 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 PEA15Q15121 130 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 DEFB133Q30KQ1 61 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 FRMPD2BQ6IN97 320 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 OPN5Q6U736 354 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 KCTD20Q7Z5Y7 419 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SLC35F2Q8IXU6 374 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 GCNT2Q8N0V5 402 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SPARTQ8N0X7 666 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 ACVR1CQ8NER5 493 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 M1APQ8TC57 530 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 CHTF18Q8WVB6 975 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 ZNF382Q96SR6 550 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 MMP27Q9H306 513 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 FZD8Q9H461 694 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 FOLH1BQ9HBA9 442 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 TM7SF3Q9NS93 570 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 ZDHHC2Q9UIJ5 367 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 A0A1W2PS29 197 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 MGST1P10620 155 aaKnown RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 ACPPP15309 386 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 CSF2RAP15509 400 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 ARSBP15848 533 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 PRDX3P30048 256 aaKnown RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 CD6P30203 668 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 CRMP1Q14194 572 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 PCGF3Q3KNV8 242 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 KIAA1211LQ6NV74 962 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 DPY19L2P1Q6NXN4 242 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 FBXO46Q6PJ61 603 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 PRR22Q8IZ63 422 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 METTL4Q8N3J2 472 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 MSANTD3Q96H12 275 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 PKP2Q99959 881 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 GPR62Q9BZJ7 368 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 BIN3Q9NQY0 253 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 GNG12Q9UBI6 72 aa5.25□□□□□ -1.57
SCN1A-209ENST00000635750 NOSIPQ9Y314 301 aaKnown RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 MRPS2Q9Y399 296 aaKnown RBP5.25□□□□□ -1.57
SCN1A-209ENST00000635750 SHROOM3Q8TF72 1996 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 KIR2DS5A0A0G2JLQ3 304 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 A0A0G2JNG1 304 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 KDM4FA0A1W2PPD8 638 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 MCRIP1C9JLW8 97 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 F8W036 122 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 KIR2DS3K7RE56 304 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 KCNK2O95069 426 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 SMIM17P0DL12 118 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 SGSHP51688 502 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 AFF3P51826 1226 aaKnown RBP5.24□□□□□ -1.57
SCN1A-209ENST00000635750 BLOC1S1P78537 153 aa5.24□□□□□ -1.57
SCN1A-209ENST00000635750 SNTB1Q13884 538 aaKnown RBP5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms