RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 ZNF767PQ75MW2 155 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 VRK3Q8IV63 474 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 C1QTNF2Q9BXJ5 285 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 TMEM30AQ9NV96 361 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 BABAM2Q9NXR7 383 aa13.17□□□□□ -0.3
CPSF1-212ENST00000616140 SEC16AO15027 2179 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 LOC102723532A0A0G2JNH3 316 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 TVP23AA6NH52 213 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 OR7A10O76100 309 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 PTHP01270 115 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 AGTR1P30556 359 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 GNRHRP30968 328 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 PIGAP37287 484 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 SOX9P48436 509 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 ERVK-25P63136 954 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 SERTAD2Q14140 314 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 NKPD1Q17RQ9 610 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 PGGHGQ32M88 737 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 ENTPD8Q5MY95 495 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 GARNL3Q5VVW2 1013 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 ARSKQ6UWY0 536 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 GAREM2Q75VX8 874 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 PRR22Q8IZ63 422 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 LILRA3Q8N6C8 439 aaPredicted RBP13.16□□□□□ -0.3
CPSF1-212ENST00000616140 LINC01465Q8N7H1 131 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 GPR148Q8TDV2 347 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 ZDHHC1Q8WTX9 485 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 FAM46BQ96A09 425 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 OR7D2Q96RA2 312 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 HOXD1Q9GZZ0 328 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 QRSL1Q9H0R6 528 aaKnown RBP13.16□□□□□ -0.3
CPSF1-212ENST00000616140 C2orf42Q9NWW7 574 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 ERVK-19Q9WJR5 959 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 HCFC2Q9Y5Z7 792 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 TRAV27A0A087WT01 109 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 CST5P28325 142 aaPredicted RBP13.16□□□□□ -0.3
CPSF1-212ENST00000616140 PBX2P40425 430 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 SLC6A11P48066 632 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 CAV3P56539 151 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 CDK10Q15131 360 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 ZMYND11Q15326 602 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 FAM69BQ5VUD6 431 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 B3GLCTQ6Y288 498 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 SSX6Q7RTT6 188 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 NRARPQ7Z6K4 114 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 SLC35F2Q8IXU6 374 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 KLHL15Q96M94 604 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 LDAHQ9H6V9 325 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 TAS2R16Q9NYV7 291 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 A0A0G2JMP0 313 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 H7C417 338 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 ARHGAP33O14559 1287 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 LSSP48449 732 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 SF3A2Q15428 464 aaKnown RBP13.16□□□□□ -0.3
CPSF1-212ENST00000616140 DCST2Q5T1A1 773 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 HMBOX1Q6NT76 420 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 PLXDC1Q8IUK5 500 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 OR4M2Q8NGB6 313 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 OR5L2Q8NGL0 311 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 ADAMTS18Q8TE60 1221 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 C4orf36Q96KX1 117 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 COQ10AQ96MF6 247 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 EGLN3Q9H6Z9 239 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 APC2O95996 2303 aa13.16□□□□□ -0.3
CPSF1-212ENST00000616140 MEGF11A6BM72 1044 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 PHYHO14832 338 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 BMP4P12644 408 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 RPL19P84098 196 aaKnown RBP13.15□□□□□ -0.3
CPSF1-212ENST00000616140 ELOAQ14241 798 aaKnown RBP13.15□□□□□ -0.3
CPSF1-212ENST00000616140 GBX1Q14549 363 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 MBTPS1Q14703 1052 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 PDZD9Q8IXQ8 264 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 TMEM163Q8TC26 289 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 ZNF705EA8MWA4 302 aaPredicted RBP13.15□□□□□ -0.3
CPSF1-212ENST00000616140 H3BML4 177 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 FOXE1O00358 373 aaPredicted RBP13.15□□□□□ -0.3
CPSF1-212ENST00000616140 IL1AP01583 271 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 HTR2AP28223 471 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 RABIFP47224 123 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 CTBSQ01459 385 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 RIN1Q13671 783 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 ELP2Q6IA86 826 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 Q6ZSR6 202 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 CNOT9Q92600 299 aaKnown RBP13.15□□□□□ -0.3
CPSF1-212ENST00000616140 TANKQ92844 425 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 HRASLS5Q96KN8 279 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 SLC7A11Q9UPY5 501 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 ASB4Q9Y574 426 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 EVPLQ92817 2033 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 BORCS7-ASMTA0A0B4J1R7 106 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 FAM227AF5H4B4 570 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 PAHP00439 452 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 JMJD7P0C870 316 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 TRA2BP62995 288 aaKnown RBP13.15□□□□□ -0.3
CPSF1-212ENST00000616140 SQSTM1Q13501 440 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 SLC22A8Q8TCC7 542 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 UBE2FQ969M7 185 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 PITHD1Q9GZP4 211 aaPredicted RBP13.15□□□□□ -0.3
CPSF1-212ENST00000616140 GDE1Q9NZC3 331 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 HIF3AQ9Y2N7 669 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms