RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 LIPT1Q9Y234 373 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 CIB4A0PJX0 185 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 TRIM3O75382 744 aaPredicted RBP11.79□□□□□ -0.52
LIG1-221ENST00000613670 SLC22A5O76082 557 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 DDX6P26196 483 aaKnown RBP eCLIP11.79□□□□□ -0.527e-10■■■■■ 60
LIG1-221ENST00000613670 FNTBP49356 437 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 STARP49675 285 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 CLDN12P56749 244 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 AP3S2P59780 193 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 NNATQ16517 81 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 CLPPQ16740 277 aaPredicted RBP11.79□□□□□ -0.52
LIG1-221ENST00000613670 Q5BKY6 102 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 ZNF322Q6U7Q0 402 aaPredicted RBP11.79□□□□□ -0.52
LIG1-221ENST00000613670 NUDT18Q6ZVK8 323 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 OR52E2Q8NGJ4 325 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 ATF6BQ99941 703 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 ARHGAP9Q9BRR9 750 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 VN1R3Q9BXE9 311 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 ZDHHC5Q9C0B5 715 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 B3GAT2Q9NPZ5 323 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 DPP7Q9UHL4 492 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 KCNE3Q9Y6H6 103 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 LALBAP00709 142 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 SERPINA3P01011 423 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 IRS1P35568 1242 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 CLDN20P56880 219 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 OR12D2P58182 307 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 DEFA5Q01523 94 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 CRYZQ08257 329 aaKnown RBP11.79□□□□□ -0.52
LIG1-221ENST00000613670 PRSS53Q2L4Q9 553 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 GLYR1Q49A26 553 aaPredicted RBP11.79□□□□□ -0.52
LIG1-221ENST00000613670 HSD17B12Q53GQ0 312 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 EIPR1Q53HC9 387 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 VITQ6UXI7 678 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 ERN2Q76MJ5 926 aaKnown RBP11.79□□□□□ -0.52
LIG1-221ENST00000613670 TMEM99Q8N816 258 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 OR2L2Q8NH16 312 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 ZSWIM3Q96MP5 696 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 GPA33Q99795 319 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 SGPP1Q9BX95 441 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 KLHL31Q9H511 634 aa11.79□□□□□ -0.52
LIG1-221ENST00000613670 SLC22A31A6NKX4 558 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 ARPC1BO15143 372 aaKnown RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 CASC3O15234 703 aaKnown RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 LCMT2O60294 686 aaKnown RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 NUDT14O95848 222 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 LGI1O95970 557 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 CTSLP07711 333 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 HOXB9P17482 250 aaPredicted RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 PON3Q15166 354 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 HBMQ6B0K9 141 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 TCTE3Q8IZS6 198 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 HDDC3Q8N4P3 179 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 OR13C5Q8NGS8 318 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 ATP13A2Q9NQ11 1180 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 ACSS1Q9NUB1 689 aaPredicted RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 EVA1BQ9NVM1 165 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 RCE1Q9Y256 329 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 DOCK4Q8N1I0 1966 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 TSC2P49815 1807 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 VEGFDO43915 354 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 SOD1P00441 154 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 TFP02787 698 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 EIF4EP06730 217 aaKnown RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 ENDOUP21128 410 aaKnown RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 ITGB7P26010 798 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 GMFBP60983 142 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 POU6F2P78424 691 aaPredicted RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 ZNHIT3Q15649 155 aaPredicted RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 NRSN1Q8IZ57 195 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 ADGRF3Q8IZF5 1079 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 ANKRD53Q8N9V6 530 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 SLC16A11Q8NCK7 471 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 OR13C2Q8NGS9 318 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 MSLNLQ96KJ4 702 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 UBQLN3Q9H347 655 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 DPEP2Q9H4A9 486 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 SLC27A6Q9Y2P4 619 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 GRXCR1A8MXD5 290 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 STK25O00506 426 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 AIFM1O95831 613 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 CSN2P05814 226 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 ZNF10P21506 573 aaPredicted RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 HIST1H1TP22492 207 aaPredicted RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 PDE7AQ13946 482 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 C4orf46Q504U0 113 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 TCEAL5Q5H9L2 206 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 OOSP2Q86WS3 158 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 GPALPP1Q8IXQ4 340 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 CPA6Q8N4T0 437 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 PLA2G15Q8NCC3 412 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 ZNF680Q8NEM1 530 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 GHSRQ92847 366 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 GCDHQ92947 438 aaPredicted RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 RERGQ96A58 199 aaPredicted RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 HSPA12BQ96MM6 686 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 SLC6A18Q96N87 628 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 ARL6Q9H0F7 186 aa11.78□□□□□ -0.52
LIG1-221ENST00000613670 WSB2Q9NYS7 404 aaPredicted RBP11.78□□□□□ -0.52
LIG1-221ENST00000613670 ASB4Q9Y574 426 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms