RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ACTL6AO96019 429 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 CHRM4P08173 479 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 ETFAP13804 333 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 LHX2P50458 406 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 IRX1P78414 480 aaPredicted RBP13.78□□□□□ -0.2
LIG1-219ENST00000600055 ZNF117Q03924 483 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 CHRNEQ04844 493 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 SRYQ05066 204 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 GANABQ14697 944 aaKnown RBP13.78□□□□□ -0.2
LIG1-219ENST00000600055 GPAT3Q53EU6 434 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 C1orf185Q5T7R7 199 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 RAET1LQ5VY80 246 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 CBLN3Q6UW01 205 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 RPTNQ6XPR3 784 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 FRRS1Q6ZNA5 592 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 MSRB3Q8IXL7 192 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 EID3Q8N140 333 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 B4GALNT2Q8NHY0 566 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 ZG16BQ96DA0 208 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 TTYH2Q9BSA4 534 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 NMUR2Q9GZQ4 415 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 RABEP2Q9H5N1 569 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 TMEM45AQ9NWC5 275 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 SLC25A37Q9NYZ2 338 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 VDAC3Q9Y277 283 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 CARD8Q9Y2G2 431 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 WDR45Q9Y484 360 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 MYO7BQ6PIF6 2116 aa13.78□□□□□ -0.2
LIG1-219ENST00000600055 GTPBP1O00178 669 aaKnown RBP13.77□□□□□ -0.21
LIG1-219ENST00000600055 KIAA0513O60268 411 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 DNAJC13O75165 2243 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 FREM3P0C091 2139 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 GLI4P10075 376 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 GABRA1P14867 456 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 MSX1P28360 303 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 GCKP35557 465 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 CRATP43155 626 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 SMSP52788 366 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 GYS2P54840 703 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 MAPK11Q15759 364 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 ZNF141Q15928 474 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 LRIF1Q5T3J3 769 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 METTL21CQ5VZV1 264 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 TMEM211Q6ICI0 200 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 B3GNT6Q6ZMB0 384 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 SEM1Q6ZVN7 128 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 MTERF4Q7Z6M4 381 aaKnown RBP13.77□□□□□ -0.21
LIG1-219ENST00000600055 CCDC71Q8IV32 467 aaPredicted RBP13.77□□□□□ -0.21
LIG1-219ENST00000600055 MISPQ8IVT2 679 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 ZNF808Q8N4W9 903 aaPredicted RBP13.77□□□□□ -0.21
LIG1-219ENST00000600055 ARSGQ96EG1 525 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 DTNBP1Q96EV8 351 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 SAP130Q9H0E3 1048 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 QRSL1Q9H0R6 528 aaKnown RBP13.77□□□□□ -0.21
LIG1-219ENST00000600055 RUBCNLQ9H714 662 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 PLEKHB1Q9UF11 243 aaPredicted RBP13.77□□□□□ -0.21
LIG1-219ENST00000600055 ZNF337Q9Y3M9 751 aa13.77□□□□□ -0.21
LIG1-219ENST00000600055 A0A1W2PP18 115 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 OR2M5A3KFT3 312 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 SERINC4A6NH21 518 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 AHRRA9YTQ3 701 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 H3BNH8 94 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 CLIC1O00299 241 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 BCAS1O75363 584 aaPredicted RBP13.76□□□□□ -0.21
LIG1-219ENST00000600055 NR2F1P10589 423 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 CPN1P15169 458 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 CHMP24386 653 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 COL8A1P27658 744 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 ADH7P40394 386 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 ANXA11P50995 505 aaKnown RBP13.76□□□□□ -0.21
LIG1-219ENST00000600055 CLDN18P56856 261 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 TXNL4AP83876 142 aaKnown RBP13.76□□□□□ -0.21
LIG1-219ENST00000600055 ZNF630Q2M218 657 aaPredicted RBP13.76□□□□□ -0.21
LIG1-219ENST00000600055 ACSF3Q4G176 576 aaPredicted RBP13.76□□□□□ -0.21
LIG1-219ENST00000600055 AAGABQ6PD74 315 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 ENPP6Q6UWR7 440 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 PLXDC2Q6UX71 529 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 MAMDC2Q7Z304 686 aaPredicted RBP13.76□□□□□ -0.21
LIG1-219ENST00000600055 PM20D2Q8IYS1 436 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 ZNF619Q8N2I2 560 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 OR10Q1Q8NGQ4 319 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 C10orf82Q8WW14 230 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 RND1Q92730 232 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 ZNF524Q96C55 264 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 SDCCAG3Q96C92 435 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 TRNT1Q96Q11 434 aaKnown RBP13.76□□□□□ -0.21
LIG1-219ENST00000600055 TUBA1CQ9BQE3 449 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 SLC38A1Q9H2H9 487 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 POLE3Q9NRF9 147 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 MED17Q9NVC6 651 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 VAPAQ9P0L0 249 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 KLHL14Q9P2G3 628 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 ICAM5Q9UMF0 924 aa13.76□□□□□ -0.21
LIG1-219ENST00000600055 DOPEY2Q9Y3R5 2298 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 TRBV5-3A0A0A0MS03 114 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 CLDN24A6NM45 220 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 H0YC42 278 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 GUSBP08236 651 aa13.75□□□□□ -0.21
LIG1-219ENST00000600055 HOXD4P09016 255 aaPredicted RBP13.75□□□□□ -0.21
LIG1-219ENST00000600055 NUDT7P0C024 238 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms