RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PIGTQ969N2 578 aa8.8□□□□□ -1
VRK3-216ENST00000599342 FAM120BQ96EK7 910 aaKnown RBP8.8□□□□□ -1
VRK3-216ENST00000599342 C16orf58Q96GQ5 468 aa8.8□□□□□ -1
VRK3-216ENST00000599342 ZC3HAV1LQ96H79 300 aaKnown RBP8.8□□□□□ -1
VRK3-216ENST00000599342 GMPPAQ96IJ6 420 aaPredicted RBP8.8□□□□□ -1
VRK3-216ENST00000599342 RNF145Q96MT1 663 aa8.8□□□□□ -1
VRK3-216ENST00000599342 STACQ99469 402 aa8.8□□□□□ -1
VRK3-216ENST00000599342 PRPF18Q99633 342 aaKnown RBP8.8□□□□□ -1
VRK3-216ENST00000599342 BTBD2Q9BX70 525 aa8.8□□□□□ -1
VRK3-216ENST00000599342 TMEM185BQ9H7F4 350 aa8.8□□□□□ -1
VRK3-216ENST00000599342 UBTD1Q9HAC8 227 aa8.8□□□□□ -1
VRK3-216ENST00000599342 DLL4Q9NR61 685 aa8.8□□□□□ -1
VRK3-216ENST00000599342 DUSP22Q9NRW4 184 aa8.8□□□□□ -1
VRK3-216ENST00000599342 MED17Q9NVC6 651 aa8.8□□□□□ -1
VRK3-216ENST00000599342 SLC17A7Q9P2U7 560 aa8.8□□□□□ -1
VRK3-216ENST00000599342 ATP6V1HQ9UI12 483 aa8.8□□□□□ -1
VRK3-216ENST00000599342 FAF1Q9UNN5 650 aaPredicted RBP8.8□□□□□ -1
VRK3-216ENST00000599342 PRRC2AP48634 2157 aaKnown RBP8.79□□□□□ -1
VRK3-216ENST00000599342 C7orf72A4D263 438 aa8.79□□□□□ -1
VRK3-216ENST00000599342 DEFB108AA8MXU0 73 aa8.79□□□□□ -1
VRK3-216ENST00000599342 H3BNH8 94 aa8.79□□□□□ -1
VRK3-216ENST00000599342 TNFSF11O14788 317 aa8.79□□□□□ -1
VRK3-216ENST00000599342 ARHGEF9O43307 516 aa8.79□□□□□ -1
VRK3-216ENST00000599342 CXCL13O43927 109 aa8.79□□□□□ -1
VRK3-216ENST00000599342 SMPD2O60906 423 aa8.79□□□□□ -1
VRK3-216ENST00000599342 SKAP2O75563 359 aaPredicted RBP8.79□□□□□ -1
VRK3-216ENST00000599342 LYPLA1O75608 230 aaPredicted RBP8.79□□□□□ -1
VRK3-216ENST00000599342 SLU7O95391 586 aaKnown RBP8.79□□□□□ -1
VRK3-216ENST00000599342 NUDT14O95848 222 aa8.79□□□□□ -1
VRK3-216ENST00000599342 HMGN2P05204 90 aaKnown RBP8.79□□□□□ -1
VRK3-216ENST00000599342 KRT16P08779 473 aa8.79□□□□□ -1
VRK3-216ENST00000599342 NUDT17P0C025 328 aa8.79□□□□□ -1
VRK3-216ENST00000599342 FPR1P21462 350 aa8.79□□□□□ -1
VRK3-216ENST00000599342 HOXC12P31275 282 aa8.79□□□□□ -1
VRK3-216ENST00000599342 SLC6A8P48029 635 aa8.79□□□□□ -1
VRK3-216ENST00000599342 RAC1P63000 192 aa8.79□□□□□ -1
VRK3-216ENST00000599342 TP53BP2Q13625 1128 aa8.79□□□□□ -1
VRK3-216ENST00000599342 GUSBP1Q15486 140 aa8.79□□□□□ -1
VRK3-216ENST00000599342 KRTAP21-3Q3LHN1 58 aa8.79□□□□□ -1
VRK3-216ENST00000599342 LSM12Q3MHD2 195 aaKnown RBP8.79□□□□□ -1
VRK3-216ENST00000599342 XKR7Q5GH72 579 aa8.79□□□□□ -1
VRK3-216ENST00000599342 CPTPQ5TA50 214 aa8.79□□□□□ -1
VRK3-216ENST00000599342 HBMQ6B0K9 141 aa8.79□□□□□ -1
VRK3-216ENST00000599342 GTF2IRD2BQ6EKJ0 949 aa8.79□□□□□ -1
VRK3-216ENST00000599342 CDC73Q6P1J9 531 aa8.79□□□□□ -1
VRK3-216ENST00000599342 ESPNLQ6ZVH7 1005 aa8.79□□□□□ -1
VRK3-216ENST00000599342 MTERF4Q7Z6M4 381 aaKnown RBP8.79□□□□□ -1
VRK3-216ENST00000599342 ZAR1Q86SH2 424 aa8.79□□□□□ -1
VRK3-216ENST00000599342 GTF2IRD2Q86UP8 949 aa8.79□□□□□ -1
VRK3-216ENST00000599342 STK32CQ86UX6 486 aa8.79□□□□□ -1
VRK3-216ENST00000599342 MED12LQ86YW9 2145 aa8.79□□□□□ -1
VRK3-216ENST00000599342 OR7A2PQ8NGA2 310 aa8.79□□□□□ -1
VRK3-216ENST00000599342 OR56A1Q8NGH5 318 aa8.79□□□□□ -1
VRK3-216ENST00000599342 OR2V1Q8NHB1 315 aa8.79□□□□□ -1
VRK3-216ENST00000599342 FAM110BQ8TC76 370 aa8.79□□□□□ -1
VRK3-216ENST00000599342 PHOSPHO1Q8TCT1 267 aa8.79□□□□□ -1
VRK3-216ENST00000599342 TCP10LQ8TDR4 215 aa8.79□□□□□ -1
VRK3-216ENST00000599342 ADAMTS15Q8TE58 950 aa8.79□□□□□ -1
VRK3-216ENST00000599342 CDS1Q92903 461 aa8.79□□□□□ -1
VRK3-216ENST00000599342 POM121Q96HA1 1249 aa8.79□□□□□ -1
VRK3-216ENST00000599342 REXO5Q96IC2 774 aaKnown RBP8.79□□□□□ -1
VRK3-216ENST00000599342 CCL19Q99731 98 aa8.79□□□□□ -1
VRK3-216ENST00000599342 C1orf50Q9BV19 199 aa8.79□□□□□ -1
VRK3-216ENST00000599342 ACTRT3Q9BYD9 372 aa8.79□□□□□ -1
VRK3-216ENST00000599342 HOXD1Q9GZZ0 328 aa8.79□□□□□ -1
VRK3-216ENST00000599342 PIGUQ9H490 435 aa8.79□□□□□ -1
VRK3-216ENST00000599342 L2HGDHQ9H9P8 463 aa8.79□□□□□ -1
VRK3-216ENST00000599342 GLRX2Q9NS18 164 aa8.79□□□□□ -1
VRK3-216ENST00000599342 SIRT3Q9NTG7 399 aaPredicted RBP8.79□□□□□ -1
VRK3-216ENST00000599342 FBXO34Q9NWN3 711 aa8.79□□□□□ -1
VRK3-216ENST00000599342 GIN1Q9NXP7 522 aa8.79□□□□□ -1
VRK3-216ENST00000599342 LGALS13Q9UHV8 139 aa8.79□□□□□ -1
VRK3-216ENST00000599342 CLEC4AQ9UMR7 237 aa8.79□□□□□ -1
VRK3-216ENST00000599342 SPG11Q96JI7 2443 aa8.79□□□□□ -1
VRK3-216ENST00000599342 C2CD3Q4AC94 2353 aa8.78□□□□□ -1
VRK3-216ENST00000599342 MPDZO75970 2070 aa8.78□□□□□ -1
VRK3-216ENST00000599342 GJE1A6NN92 205 aa8.78□□□□□ -1
VRK3-216ENST00000599342 ADAMDEC1O15204 470 aa8.78□□□□□ -1
VRK3-216ENST00000599342 CFLARO15519 480 aa8.78□□□□□ -1
VRK3-216ENST00000599342 SIAH2O43255 324 aa8.78□□□□□ -1
VRK3-216ENST00000599342 SS18L1O75177 396 aaPredicted RBP8.78□□□□□ -1
VRK3-216ENST00000599342 SOX30O94993 753 aa8.78□□□□□ -1
VRK3-216ENST00000599342 C6orf47O95873 294 aa8.78□□□□□ -1
VRK3-216ENST00000599342 OPN1LWP04000 364 aa8.78□□□□□ -1
VRK3-216ENST00000599342 LAMP1P11279 417 aa8.78□□□□□ -1
VRK3-216ENST00000599342 PPP3CBP16298 524 aa8.78□□□□□ -1
VRK3-216ENST00000599342 PRPS1L1P21108 318 aa8.78□□□□□ -1
VRK3-216ENST00000599342 ELK4P28324 431 aa8.78□□□□□ -1
VRK3-216ENST00000599342 ADSLP30566 484 aaPredicted RBP8.78□□□□□ -1
VRK3-216ENST00000599342 SOAT1P35610 550 aa8.78□□□□□ -1
VRK3-216ENST00000599342 EIF1P41567 113 aaKnown RBP8.78□□□□□ -1
VRK3-216ENST00000599342 CCT3P49368 545 aaKnown RBP8.78□□□□□ -1
VRK3-216ENST00000599342 FOXF1Q12946 379 aa8.78□□□□□ -1
VRK3-216ENST00000599342 MAD2L1Q13257 205 aaPredicted RBP8.78□□□□□ -1
VRK3-216ENST00000599342 PTGR1Q14914 329 aa8.78□□□□□ -1
VRK3-216ENST00000599342 CD226Q15762 336 aa8.78□□□□□ -1
VRK3-216ENST00000599342 ACKR1Q16570 336 aa8.78□□□□□ -1
VRK3-216ENST00000599342 CTU2Q2VPK5 515 aaKnown RBP8.78□□□□□ -1
VRK3-216ENST00000599342 UGT3A2Q3SY77 523 aa8.78□□□□□ -1
VRK3-216ENST00000599342 Q5PR19 223 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms