RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 E2F6O75461 281 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 EPPINO95925 133 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 UQCRBP14927 111 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 ARHGDIAP52565 204 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 SMIM11AP58511 58 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 SPIBQ01892 262 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 SRSF6Q13247 344 aaKnown RBP14.18□□□□□ -0.14
UPF1-206ENST00000598471 GK3PQ14409 553 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 ACER2Q5QJU3 275 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 ATP1A1-AS1Q5TC04 95 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 ABHD17BQ5VST6 288 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 FCRLBQ6BAA4 426 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 LYPD8Q6UX82 237 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 POGLUT1Q8NBL1 392 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 ICA1LQ8NDH6 482 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 CATSPER1Q8NEC5 780 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 OR6T1Q8NGN1 323 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 SDCCAG3Q96C92 435 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 SECISBP2Q96T21 854 aaKnown RBP14.18□□□□□ -0.14
UPF1-206ENST00000598471 PIP5K1AQ99755 562 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 RSPO3Q9BXY4 272 aaPredicted RBP14.18□□□□□ -0.14
UPF1-206ENST00000598471 POLR2J2Q9GZM3 115 aaKnown RBP14.18□□□□□ -0.14
UPF1-206ENST00000598471 POLR2J3Q9H1A7 115 aaKnown RBP14.18□□□□□ -0.14
UPF1-206ENST00000598471 SEMA6AQ9H2E6 1030 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 CCDC86Q9H6F5 360 aaKnown RBP14.18□□□□□ -0.14
UPF1-206ENST00000598471 HPF1Q9NWY4 346 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 DNAJB12Q9NXW2 375 aaKnown RBP14.18□□□□□ -0.14
UPF1-206ENST00000598471 FLRT3Q9NZU0 649 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 TESQ9UGI8 421 aaKnown RBP14.18□□□□□ -0.14
UPF1-206ENST00000598471 CHST2Q9Y4C5 530 aa14.18□□□□□ -0.14
UPF1-206ENST00000598471 PRAMEF25A6NGN4 478 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 CDK2AP1O14519 115 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 CASQ2O14958 399 aaPredicted RBP14.17□□□□□ -0.14
UPF1-206ENST00000598471 ZNF264O43296 627 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 FRS3O43559 492 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 TLX3O43711 291 aaPredicted RBP14.17□□□□□ -0.14
UPF1-206ENST00000598471 FADS1O60427 444 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 FMO6PO60774 539 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 CYP7B1O75881 506 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 OR6B1O95007 311 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 UBTFL6P0CB48 400 aaPredicted RBP14.17□□□□□ -0.14
UPF1-206ENST00000598471 CASRP41180 1078 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 RNF144AP50876 292 aaPredicted RBP14.17□□□□□ -0.14
UPF1-206ENST00000598471 TAS2R41P59536 307 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 ZNF791Q3KP31 576 aaPredicted RBP14.17□□□□□ -0.14
UPF1-206ENST00000598471 FNDC7Q5VTL7 733 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 HMBOX1Q6NT76 420 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 IL20RBQ6UXL0 311 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 PLEKHM3Q6ZWE6 761 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 COMTD1Q86VU5 262 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 LACC1Q8IV20 430 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 GALNT16Q8N428 558 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 SVOPLQ8N434 492 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 TMCO5AQ8N6Q1 288 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 CNOT9Q92600 299 aaKnown RBP14.17□□□□□ -0.14
UPF1-206ENST00000598471 PRRC1Q96M27 445 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 MCHR1Q99705 422 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 ZNF559Q9BR84 538 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 VCXQ9H320 206 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 METTL7AQ9H8H3 244 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 EXOSC3Q9NQT5 275 aaKnown RBP14.17□□□□□ -0.14
UPF1-206ENST00000598471 SDHAF3Q9NRP4 125 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 KLRF1Q9NZS2 232 aa14.17□□□□□ -0.14
UPF1-206ENST00000598471 SAMHD1Q9Y3Z3 626 aaKnown RBP14.17□□□□□ -0.14
UPF1-206ENST00000598471 SCO2O43819 266 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 EIF4E2O60573 245 aaKnown RBP14.16□□□□□ -0.14
UPF1-206ENST00000598471 DIRAS1O95057 198 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 PRSS23O95084 383 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 ANGPTL1O95841 491 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 ZNF23P17027 643 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 WT1P19544 449 aaPredicted RBP14.16□□□□□ -0.14
UPF1-206ENST00000598471 RRM2P31350 389 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 YAP1P46937 504 aaKnown RBP14.16□□□□□ -0.14
UPF1-206ENST00000598471 SLC6A8P48029 635 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 SOX8P57073 446 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 IQCCQ4KMZ1 466 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 B3GNTL1Q67FW5 361 aaPredicted RBP14.16□□□□□ -0.14
UPF1-206ENST00000598471 DESI1Q6ICB0 168 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 RTL4Q6ZR62 310 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 RBM45Q8IUH3 476 aaKnown RBP14.16□□□□□ -0.14
UPF1-206ENST00000598471 GATSQ8NAP1 163 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 PIK3C3Q8NEB9 887 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 FAM71CQ8NEG0 241 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 OR10G3Q8NGC4 313 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 OR4D11Q8NGI4 311 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 GRHL3Q8TE85 626 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 PSMF1Q92530 271 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 EME1Q96AY2 570 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 SGCZQ96LD1 299 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 NODALQ96S42 347 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 C9orf16Q9BUW7 83 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 FNDC11Q9BVV2 318 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 TRIM2Q9C040 744 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 LAT2Q9GZY6 243 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 TMEM27Q9HBJ8 222 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 TESMINQ9Y4I5 508 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 PCSK5Q92824 1860 aa14.16□□□□□ -0.14
UPF1-206ENST00000598471 SAC3D1A6NKF1 404 aa14.15□□□□□ -0.14
UPF1-206ENST00000598471 TNFRSF11BO00300 401 aa14.15□□□□□ -0.14
UPF1-206ENST00000598471 RRP8O43159 456 aaKnown RBP14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms