RNA–Protein interactions for RNA: ENST00000595945.5

SHKBP1-211, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-211ENST00000595945 CD226Q15762 336 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 NTRK2Q16620 822 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 CRTC2Q53ET0 693 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 SVOPLQ8N434 492 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 ZNF614Q8N883 585 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 CATSPER1Q8NEC5 780 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 OR4C15Q8NGM1 316 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 OR5K1Q8NHB7 308 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 NR4A3Q92570 626 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 SPACA9Q96E40 222 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 NRBF2Q96F24 287 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 PRRC1Q96M27 445 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 NODALQ96S42 347 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 EPYCQ99645 322 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 RTN4RQ9BZR6 473 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 KLHL4Q9C0H6 718 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 POLR2J2Q9GZM3 115 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 POLR2J3Q9H1A7 115 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 CDCP1Q9H5V8 836 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 ZBTB20Q9HC78 741 aaPredicted RBP13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 EXOSC3Q9NQT5 275 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 ACER3Q9NUN7 267 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 CNOT11Q9UKZ1 510 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 FAM32AQ9Y421 112 aaKnown RBP13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 LYVE1Q9Y5Y7 322 aa13.52□□□□□ -0.25
SHKBP1-211ENST00000595945 IGF2RP11717 2491 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 URB1O60287 2271 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 SCDO00767 359 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 GNGT2O14610 69 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 OIP5O43482 229 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 ADAM11O75078 769 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 PRG2P13727 222 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 ZNF26P17031 533 aaPredicted RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 FUT4P22083 530 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 RRM2P31350 389 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 DNAJA1P31689 397 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 SOX3P41225 446 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 ACAA2P42765 397 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 TMED10P49755 219 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 GAS1P54826 345 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 AIMP2Q13155 320 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 FCRLBQ6BAA4 426 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 PPP4R4Q6NUP7 873 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 SHQ1Q6PI26 577 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 PACS2Q86VP3 889 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 CYP4Z1Q86W10 505 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 ZNF440Q8IYI8 595 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 DND1Q8IYX4 353 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 OFCC1Q8IZS5 231 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 SLC5A8Q8N695 610 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 BRIX1Q8TDN6 353 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 GRHL3Q8TE85 626 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 NTNG2Q96CW9 530 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 MCHR1Q99705 422 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 SLC29A1Q99808 456 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 CIB1Q99828 191 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 FUZQ9BT04 418 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 C9orf16Q9BUW7 83 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 LAT2Q9GZY6 243 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 GABARAPL1Q9H0R8 117 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 COQ10BQ9H8M1 238 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 REEP1Q9H902 201 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 ATP13A2Q9NQ11 1180 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 TESQ9UGI8 421 aaKnown RBP13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 OAZ3Q9UMX2 235 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 TESMINQ9Y4I5 508 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 NCOR2Q9Y618 2525 aa13.51□□□□□ -0.25
SHKBP1-211ENST00000595945 SOCS2O14508 198 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 NKX2-8O15522 239 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 TLX3O43711 291 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 OR6B1O95007 311 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 OR5F1O95221 314 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 LYPD3O95274 346 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 CSTAP01040 98 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 FREM3P0C091 2139 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 GKN3PP0CG01 181 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 ZNF23P17027 643 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 ENDOUP21128 410 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 HTR2AP28223 471 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 EVI2BP34910 448 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 PTGDSP41222 190 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 SSR4P51571 173 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 SOX8P57073 446 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 HOXC5Q00444 222 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 SPIBQ01892 262 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 EPS8Q12929 822 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 PPP1R8Q12972 351 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 SKP2Q13309 424 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 GANABQ14697 944 aaKnown RBP13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 NDUFAF6Q330K2 333 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 ATP1A1-AS1Q5TC04 95 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 TMEM81Q6P7N7 255 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 TBPL2Q6SJ96 375 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 OPN5Q6U736 354 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 ZNF550Q7Z398 422 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 MARCH3Q86UD3 253 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 RANBP3LQ86VV4 465 aaPredicted RBP13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 HIPK1Q86Z02 1210 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 PACRGLQ8N7B6 248 aa13.5□□□□□ -0.25
SHKBP1-211ENST00000595945 THAP4Q8WY91 577 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.8 ms