RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 NSA2O95478 260 aaKnown RBP18.24■□□□□ 0.51
CLIP3-206ENST00000593074 CD40LGP29965 261 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 CRYBB2P43320 205 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 PPP5CP53041 499 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 AADACL4Q5VUY2 407 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 BRIX1Q8TDN6 353 aaKnown RBP18.24■□□□□ 0.51
CLIP3-206ENST00000593074 TMEM239Q8WW34 195 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 C6orf62Q9GZU0 229 aaPredicted RBP18.24■□□□□ 0.51
CLIP3-206ENST00000593074 STUB1Q9UNE7 303 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 TAF4O00268 1085 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 KPNA4O00629 521 aaPredicted RBP18.24■□□□□ 0.51
CLIP3-206ENST00000593074 DRD5P21918 477 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 OXA1LQ15070 435 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 FLYWCH1Q4VC44 716 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 C14orf28Q4W4Y0 310 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 PHC2Q8IXK0 858 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 DRAXINQ8NBI3 349 aaPredicted RBP18.24■□□□□ 0.51
CLIP3-206ENST00000593074 OR2T33Q8NG76 320 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 OR6C4Q8NGE1 309 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 DNASE2BQ8WZ79 361 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 RIT1Q92963 219 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 RFKQ969G6 155 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 PEX11GQ96HA9 241 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 TGM7Q96PF1 710 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 UCKL1Q9NWZ5 548 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 CLDN16Q9Y5I7 305 aa18.24■□□□□ 0.51
CLIP3-206ENST00000593074 RHPN2P1A8MT19 583 aa18.23■□□□□ 0.51
CLIP3-206ENST00000593074 CPEP16870 476 aa18.23■□□□□ 0.51
CLIP3-206ENST00000593074 PSMA1P25786 263 aaKnown RBP18.23■□□□□ 0.51
CLIP3-206ENST00000593074 SOX6P35712 828 aa18.23■□□□□ 0.51
CLIP3-206ENST00000593074 WNT4P56705 351 aa18.23■□□□□ 0.51
CLIP3-206ENST00000593074 ZP2Q05996 745 aa18.23■□□□□ 0.51
CLIP3-206ENST00000593074 SRSF5Q13243 272 aaKnown RBP18.23■□□□□ 0.51
CLIP3-206ENST00000593074 ZNHIT3Q15649 155 aaPredicted RBP18.23■□□□□ 0.51
CLIP3-206ENST00000593074 GRAMD2AQ8IUY3 354 aa18.23■□□□□ 0.51
CLIP3-206ENST00000593074 VSTM2LQ96N03 204 aa18.23■□□□□ 0.51
CLIP3-206ENST00000593074 PLCL2Q9UPR0 1127 aa18.23■□□□□ 0.51
CLIP3-206ENST00000593074 CARD8Q9Y2G2 431 aa18.23■□□□□ 0.51
CLIP3-206ENST00000593074 EXOSC1Q9Y3B2 195 aaKnown RBP18.23■□□□□ 0.51
CLIP3-206ENST00000593074 CH25HO95992 272 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 PTNP21246 168 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 MLLT3P42568 568 aaPredicted RBP18.22■□□□□ 0.51
CLIP3-206ENST00000593074 GCGRP47871 477 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 CDH11P55287 796 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 PRKCDQ05655 676 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 STX4Q12846 297 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 GARNL3Q5VVW2 1013 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 ZNF613Q6PF04 617 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 OR9Q1Q8NGQ5 310 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 PFN4Q8NHR9 129 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 RBM18Q96H35 190 aaKnown RBP18.22■□□□□ 0.51
CLIP3-206ENST00000593074 ZNF559Q9BR84 538 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 DPH1Q9BZG8 443 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 RHBDL2Q9NX52 303 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 DAPK2Q9UIK4 370 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 SIT1Q9Y3P8 196 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 TLCD2A6NGC4 264 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 UNC119BA6NIH7 251 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 K7ESF4 209 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 BCAT2O15382 392 aaPredicted RBP18.22■□□□□ 0.51
CLIP3-206ENST00000593074 PIAS2O75928 621 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 HMGN1P05114 100 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 DCNP07585 359 aaKnown RBP18.22■□□□□ 0.51
CLIP3-206ENST00000593074 ZGLP1P0C6A0 271 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 RNF144AP50876 292 aaPredicted RBP18.22■□□□□ 0.51
CLIP3-206ENST00000593074 FXYD6P3P58550 94 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 PDZK1Q5T2W1 519 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 LIPKQ5VXJ0 399 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 SNX29P2Q8IUI4 249 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 FANK1Q8TC84 345 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 SAMD8Q96LT4 415 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 CHRNA10Q9GZZ6 450 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 UBQLN3Q9H347 655 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 ISYNA1Q9NPH2 558 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 PRTFDC1Q9NRG1 225 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 C20orf141Q9NUB4 165 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 IRAK4Q9NWZ3 460 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 SOHLH2Q9NX45 425 aa18.22■□□□□ 0.51
CLIP3-206ENST00000593074 SIDT1Q9NXL6 827 aaKnown RBP18.22■□□□□ 0.51
CLIP3-206ENST00000593074 CDC123O75794 336 aaPredicted RBP18.21■□□□□ 0.51
CLIP3-206ENST00000593074 APOL3O95236 402 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 IGKV1D-16P01601 117 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 MAKP20794 623 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 SSTR4P31391 388 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 S100A5P33763 92 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 PSMD7P51665 324 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 AFF3P51826 1226 aaKnown RBP18.21■□□□□ 0.51
CLIP3-206ENST00000593074 GFERP55789 205 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 MAT1AQ00266 395 aaKnown RBP18.21■□□□□ 0.51
CLIP3-206ENST00000593074 BNC1Q01954 994 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 TRIM16LQ309B1 348 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 WDR45BQ5MNZ6 344 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 PERM1Q5SV97 790 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 NXNL2Q5VZ03 156 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 MINDY2Q8NBR6 621 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 CNOT9Q92600 299 aaKnown RBP18.21■□□□□ 0.51
CLIP3-206ENST00000593074 TRMT61AQ96FX7 289 aaKnown RBP18.21■□□□□ 0.51
CLIP3-206ENST00000593074 ZDHHC12Q96GR4 267 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 OR52D1Q9H346 318 aa18.21■□□□□ 0.51
CLIP3-206ENST00000593074 SIAEQ9HAT2 523 aa18.21■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms