RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 NRBF2Q96F24 287 aa20.47■□□□□ 0.87
ATG4D-209ENST00000588857 ZNF184Q99676 751 aaPredicted RBP20.47■□□□□ 0.87
ATG4D-209ENST00000588857 ZBTB20Q9HC78 741 aaPredicted RBP20.47■□□□□ 0.87
ATG4D-209ENST00000588857 WDR70Q9NW82 654 aa20.47■□□□□ 0.87
ATG4D-209ENST00000588857 RHCGQ9UBD6 479 aa20.47■□□□□ 0.87
ATG4D-209ENST00000588857 PRDM4Q9UKN5 801 aa20.47■□□□□ 0.87
ATG4D-209ENST00000588857 H3BNH8 94 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 ICOSLGO75144 302 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 OR2J2O76002 312 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 GADD45GO95257 159 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 OXSR1O95747 527 aaPredicted RBP20.46■□□□□ 0.87
ATG4D-209ENST00000588857 NAGAP17050 411 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 IFNA8P32881 189 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 SMIM11AP58511 58 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 TGIF1Q15583 401 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 ZNF605Q86T29 641 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 GRAMD2AQ8IUY3 354 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 KBTBD2Q8IY47 623 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 OR52J3Q8NH60 311 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 PHF10Q8WUB8 498 aaKnown RBP20.46■□□□□ 0.87
ATG4D-209ENST00000588857 DNAJC9Q8WXX5 260 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 IP6K3Q96PC2 410 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 FNDC11Q9BVV2 318 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 FLRT3Q9NZU0 649 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 SLC35A3Q9Y2D2 325 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 LYVE1Q9Y5Y7 322 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 EI24O14681 340 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 FFAR1O14842 300 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 SEMA7AO75326 666 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 NADKO95544 446 aaPredicted RBP20.46■□□□□ 0.87
ATG4D-209ENST00000588857 CSTAP01040 98 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 TMED10P49755 219 aaKnown RBP20.46■□□□□ 0.87
ATG4D-209ENST00000588857 AQP4P55087 323 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 PIN1Q13526 163 aaPredicted RBP20.46■□□□□ 0.87
ATG4D-209ENST00000588857 GK3PQ14409 553 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 COLEC12Q5KU26 742 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 SLC15A4Q8N697 577 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 CNOT9Q92600 299 aaKnown RBP20.46■□□□□ 0.87
ATG4D-209ENST00000588857 PRRC1Q96M27 445 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 MCHR1Q99705 422 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 NMNAT1Q9HAN9 279 aaPredicted RBP20.46■□□□□ 0.87
ATG4D-209ENST00000588857 ACER3Q9NUN7 267 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 ACAD8Q9UKU7 415 aa20.46■□□□□ 0.87
ATG4D-209ENST00000588857 MAGED1Q9Y5V3 778 aaPredicted RBP20.46■□□□□ 0.87
ATG4D-209ENST00000588857 USP24Q9UPU5 2620 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 UGT2B11O75310 529 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 H1F0P07305 194 aaKnown RBP20.45■□□□□ 0.86
ATG4D-209ENST00000588857 NGFRP08138 427 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 TAS2R41P59536 307 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 HOXC5Q00444 222 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 ATP1A4Q13733 1029 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 TBPL2Q6SJ96 375 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 HS3ST5Q8IZT8 346 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 MAGEE2Q8TD90 523 aaPredicted RBP20.45■□□□□ 0.86
ATG4D-209ENST00000588857 TBL1XR1Q9BZK7 514 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 PDP1Q9P0J1 537 aaPredicted RBP20.45■□□□□ 0.86
ATG4D-209ENST00000588857 A4GNTQ9UNA3 340 aa20.45■□□□□ 0.86
ATG4D-209ENST00000588857 CPSF4LA6NMK7 179 aaKnown RBP20.44■□□□□ 0.86
ATG4D-209ENST00000588857 H0YJX3 145 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 ZNF354AO60765 605 aaPredicted RBP20.44■□□□□ 0.86
ATG4D-209ENST00000588857 SERPINA7P05543 415 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 UBTFL6P0CB48 400 aaPredicted RBP20.44■□□□□ 0.86
ATG4D-209ENST00000588857 GKN3PP0CG01 181 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 LIFP15018 202 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 ADH7P40394 386 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 HMGA2P52926 109 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 FOXD4Q12950 439 aaPredicted RBP20.44■□□□□ 0.86
ATG4D-209ENST00000588857 DAG1Q14118 895 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 DESI1Q6ICB0 168 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 PLEKHM3Q6ZWE6 761 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 ZNF550Q7Z398 422 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 ADAMTS17Q8TE56 1095 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 SLC35B4Q969S0 331 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 RASL10BQ96S79 203 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 PRR14Q9BWN1 585 aa20.44■□□□□ 0.86
ATG4D-209ENST00000588857 DNAJB12Q9NXW2 375 aaKnown RBP20.44■□□□□ 0.86
ATG4D-209ENST00000588857 TESQ9UGI8 421 aaKnown RBP20.44■□□□□ 0.86
ATG4D-209ENST00000588857 GTPBP1O00178 669 aaKnown RBP20.43■□□□□ 0.86
ATG4D-209ENST00000588857 TPST2O60704 377 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 BCAS1O75363 584 aaPredicted RBP20.43■□□□□ 0.86
ATG4D-209ENST00000588857 CYP7B1O75881 506 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 ITGAMP11215 1152 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 ENDOUP21128 410 aaKnown RBP20.43■□□□□ 0.86
ATG4D-209ENST00000588857 ALDH3A2P51648 485 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 ZNF136P52737 540 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 FBXW4P57775 412 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 LAPTM4AQ15012 233 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 EXOC3L2Q2M3D2 409 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 FGD3Q5JSP0 725 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 ENTPD8Q5MY95 495 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 NUP54Q7Z3B4 507 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 SLC5A8Q8N695 610 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 GATSQ8NAP1 163 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 PIK3C3Q8NEB9 887 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 OR4C15Q8NGM1 316 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 OR5M3Q8NGP4 307 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 PHOSPHO1Q8TCT1 267 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 TMCO6Q96DC7 493 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 DHRS1Q96LJ7 313 aa20.43■□□□□ 0.86
ATG4D-209ENST00000588857 RBM4BQ9BQ04 359 aaKnown RBP20.43■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms