RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 RBM24Q9BX46 236 aaKnown RBP11.18□□□□□ -0.62
SS18-225ENST00000585121 C20orf27Q9GZN8 174 aa11.18□□□□□ -0.62
SS18-225ENST00000585121 MEAF6Q9HAF1 191 aa11.18□□□□□ -0.62
SS18-225ENST00000585121 TMBIM4Q9HC24 238 aa11.18□□□□□ -0.62
SS18-225ENST00000585121 PNPOQ9NVS9 261 aa11.18□□□□□ -0.62
SS18-225ENST00000585121 THAP1Q9NVV9 213 aa11.18□□□□□ -0.62
SS18-225ENST00000585121 GPATCH2Q9NW75 528 aa11.18□□□□□ -0.62
SS18-225ENST00000585121 ITGB1BP2Q9UKP3 347 aa11.18□□□□□ -0.62
SS18-225ENST00000585121 VDAC3Q9Y277 283 aa11.18□□□□□ -0.62
SS18-225ENST00000585121 HCFC1P51610 2035 aa11.18□□□□□ -0.62
SS18-225ENST00000585121 ARHGAP21Q5T5U3 1957 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 TUBAL3A6NHL2 446 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 GTPBP1O00178 669 aaKnown RBP11.17□□□□□ -0.62
SS18-225ENST00000585121 ZNF17P17021 662 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 MATN1P21941 496 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 ME2P23368 584 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 HBA1P69905 142 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 SORDQ00796 357 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 FOXF2Q12947 444 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 SNTB1Q13884 538 aaKnown RBP11.17□□□□□ -0.62
SS18-225ENST00000585121 DPY19L1Q2PZI1 675 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 C6orf120Q7Z4R8 191 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 ZAR1Q86SH2 424 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 LUZP2Q86TE4 346 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 WDR75Q8IWA0 830 aaKnown RBP11.17□□□□□ -0.62
SS18-225ENST00000585121 OR8J2Q8NGG1 315 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 B4GALNT2Q8NHY0 566 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 PHOSPHO1Q8TCT1 267 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 SH3YL1Q96HL8 342 aaPredicted RBP11.17□□□□□ -0.62
SS18-225ENST00000585121 PINK1Q9BXM7 581 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 PRRG4Q9BZD6 226 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 FBXO34Q9NWN3 711 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 PAQR5Q9NXK6 330 aaPredicted RBP11.17□□□□□ -0.62
SS18-225ENST00000585121 DNAJB12Q9NXW2 375 aaKnown RBP11.17□□□□□ -0.62
SS18-225ENST00000585121 CRIM1Q9NZV1 1036 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 JKAMPQ9P055 326 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 PACSIN3Q9UKS6 424 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 EDARQ9UNE0 448 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 ZNF175Q9Y473 711 aa11.17□□□□□ -0.62
SS18-225ENST00000585121 RNF103-CHMP3A0A140T963 221 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 PRSS51A0A1B0GVH4 220 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 TRPC5OSA6NMA1 111 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 HMGB1P1B2RPK0 211 aaPredicted RBP11.16□□□□□ -0.62
SS18-225ENST00000585121 SLCO1B7G3V0H7 640 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 CPSF4O95639 269 aaKnown RBP11.16□□□□□ -0.62
SS18-225ENST00000585121 NUDT14O95848 222 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 TGM6O95932 706 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 AGR2O95994 175 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 AK1P00568 194 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 FCGR2AP12318 317 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 SUCLG1P53597 346 aaKnown RBP11.16□□□□□ -0.62
SS18-225ENST00000585121 SLC18A1P54219 525 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 ATP12AP54707 1039 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 CLDN15P56746 228 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 MAGOHP61326 146 aaKnown RBP11.16□□□□□ -0.62
SS18-225ENST00000585121 OCRLQ01968 901 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 FGFBP1Q14512 234 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 PDSS1Q5T2R2 415 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 ATAD3BQ5T9A4 648 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 AGBL2Q5U5Z8 902 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 FBXW10Q5XX13 1052 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 PPP4R4Q6NUP7 873 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 PLXDC2Q6UX71 529 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 SPATA19Q7Z5L4 167 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 GTPBP8Q8N3Z3 284 aaPredicted RBP11.16□□□□□ -0.62
SS18-225ENST00000585121 CNEP1R1Q8N9A8 125 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 RAB3IL1Q8TBN0 382 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 TESCQ96BS2 214 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 SLC35G5Q96KT7 338 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 OR7D2Q96RA2 312 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 POLDIP3Q9BY77 421 aaKnown RBP11.16□□□□□ -0.62
SS18-225ENST00000585121 MED17Q9NVC6 651 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 EXD2Q9NVH0 621 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 SPG11Q96JI7 2443 aa11.16□□□□□ -0.62
SS18-225ENST00000585121 A0A1W2PNV4 684 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 SHISA8B8ZZ34 492 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 EIF1AYO14602 144 aaKnown RBP11.15□□□□□ -0.62
SS18-225ENST00000585121 HDAC3O15379 428 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 SMNDC1O75940 238 aaKnown RBP eCLIP11.15□□□□□ -0.62
SS18-225ENST00000585121 EPXP11678 715 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 UQCRC2P22695 453 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 S100A3P33764 101 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 EIF1P41567 113 aaKnown RBP11.15□□□□□ -0.62
SS18-225ENST00000585121 CLDN20P56880 219 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 WDR4P57081 412 aaKnown RBP11.15□□□□□ -0.62
SS18-225ENST00000585121 TMEM44Q2T9K0 475 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 OGFOD2Q6N063 350 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 CLECL1Q8IZS7 167 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 METTL25Q8N6Q8 603 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 ZNF614Q8N883 585 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 FIG4Q92562 907 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 ATP6V1G3Q96LB4 118 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 ZBTB18Q99592 522 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 MANSC1Q9H8J5 431 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 NDRG3Q9UGV2 375 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 AKAP9Q99996 3911 aa11.15□□□□□ -0.62
SS18-225ENST00000585121 PDZD2O15018 2839 aa11.15□□□□□ -0.63
SS18-225ENST00000585121 C7orf72A4D263 438 aa11.14□□□□□ -0.63
SS18-225ENST00000585121 A6NNC1 897 aa11.14□□□□□ -0.63
SS18-225ENST00000585121 E9PBE3 544 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms