RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 SH3YL1Q96HL8 342 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-209ENST00000582653 TMEM109Q9BVC6 243 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 CXorf36Q9H7Y0 433 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 BEX4Q9NWD9 120 aaPredicted RBP18.4■□□□□ 0.54
SHMT1-209ENST00000582653 TESMINQ9Y4I5 508 aa18.4■□□□□ 0.54
SHMT1-209ENST00000582653 CTIFO43310 598 aaKnown RBP18.39■□□□□ 0.53
SHMT1-209ENST00000582653 C6orf47O95873 294 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 NGFRP08138 427 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 CD8BP10966 210 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 RPL3P39023 403 aaKnown RBP18.39■□□□□ 0.53
SHMT1-209ENST00000582653 CCT3P49368 545 aaKnown RBP18.39■□□□□ 0.53
SHMT1-209ENST00000582653 RNF144AP50876 292 aaPredicted RBP18.39■□□□□ 0.53
SHMT1-209ENST00000582653 RPS3AP61247 264 aaKnown RBP18.39■□□□□ 0.53
SHMT1-209ENST00000582653 POU6F2P78424 691 aaPredicted RBP18.39■□□□□ 0.53
SHMT1-209ENST00000582653 FGFBP1Q14512 234 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 SGCBQ16585 318 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 METTL25Q8N6Q8 603 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 OR5P2Q8WZ92 322 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 COQ8BQ96D53 544 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 SLC39A3Q9BRY0 314 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 BTBD2Q9BX70 525 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 GSX1Q9H4S2 264 aaPredicted RBP18.39■□□□□ 0.53
SHMT1-209ENST00000582653 HHATLQ9HCP6 504 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 UBQLN4Q9NRR5 601 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 GIN1Q9NXP7 522 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 ZNF226Q9NYT6 803 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 STOML1Q9UBI4 398 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 KCNE3Q9Y6H6 103 aa18.39■□□□□ 0.53
SHMT1-209ENST00000582653 NIPBLQ6KC79 2804 aaeCLIP18.38■□□□□ 0.53
SHMT1-209ENST00000582653 EIF1AYO14602 144 aaKnown RBP18.38■□□□□ 0.53
SHMT1-209ENST00000582653 AQP8O94778 261 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 G6PDP11413 515 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 HPGDP15428 266 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 HOXB4P17483 251 aaPredicted RBP18.38■□□□□ 0.53
SHMT1-209ENST00000582653 DDX5P17844 614 aaKnown RBP18.38■□□□□ 0.53
SHMT1-209ENST00000582653 EIF1AXP47813 144 aaKnown RBP18.38■□□□□ 0.53
SHMT1-209ENST00000582653 SERPINB4P48594 390 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 ZNF844Q08AG5 666 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 CD226Q15762 336 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 KRT71Q3SY84 523 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 PPP4R4Q6NUP7 873 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 RIMKLAQ8IXN7 391 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 ZNF610Q8N9Z0 462 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 WFDC11Q8NEX6 87 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 PPP1R36Q96LQ0 422 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 PARD6BQ9BYG5 372 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 PIGUQ9H490 435 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 MED17Q9NVC6 651 aa18.38■□□□□ 0.53
SHMT1-209ENST00000582653 NPIPA5A0A0B4J1W7 369 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 NPIPA7E9PJI5 369 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 SCDO00767 359 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 NPIPA8P0DM63 369 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 UGT2B10P36537 528 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 SLC6A8P48029 635 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 TP53BP2Q13625 1128 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 GUSBP1Q15486 140 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 SPDYE7PQ495Y7 208 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 CDC73Q6P1J9 531 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 MREGQ8N565 214 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 PSMA8Q8TAA3 256 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 PPP1R14CQ8TAE6 165 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 RNF145Q96MT1 663 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 STACQ99469 402 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 ACTRT3Q9BYD9 372 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 DUSP22Q9NRW4 184 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 ATAD3AQ9NVI7 634 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 KLHL28Q9NXS3 571 aa18.37■□□□□ 0.53
SHMT1-209ENST00000582653 C6orf203Q9P0P8 240 aaPredicted RBP18.37■□□□□ 0.53
SHMT1-209ENST00000582653 A0A087WZY1 265 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 DEFB108AA8MXU0 73 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 C16orf97H3BN30 126 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 RGS16O15492 202 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-209ENST00000582653 CFLARO15519 480 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 HSPA4LO95757 839 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 POU2F1P14859 743 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 ZNF17P17021 662 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 PRPS1L1P21108 318 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 CRYGSP22914 178 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 PSMA4P25789 261 aaKnown RBP18.36■□□□□ 0.53
SHMT1-209ENST00000582653 LCN1P31025 176 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 ZNF41P51814 821 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-209ENST00000582653 NKX6-1P78426 367 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-209ENST00000582653 CHI3L2Q15782 390 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 PDCD2Q16342 344 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-209ENST00000582653 PGS1Q32NB8 556 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 PLPPR5Q32ZL2 321 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 LSM12Q3MHD2 195 aaKnown RBP18.36■□□□□ 0.53
SHMT1-209ENST00000582653 SHEQ5VZ18 495 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 FAM214BQ7L5A3 538 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 CXorf67Q86X51 503 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-209ENST00000582653 GTPBP8Q8N3Z3 284 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-209ENST00000582653 ZNF781Q8N8C0 355 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 OR5AK3PQ8NH89 298 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 B4GALNT2Q8NHY0 566 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 POC1BQ8TC44 478 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 ADAMTS15Q8TE58 950 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 PRPF18Q99633 342 aaKnown RBP18.36■□□□□ 0.53
SHMT1-209ENST00000582653 PRRG4Q9BZD6 226 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 C20orf27Q9GZN8 174 aa18.36■□□□□ 0.53
SHMT1-209ENST00000582653 TMEM185BQ9H7F4 350 aa18.36■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms