RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 MRPL38Q96DV4 380 aaKnown RBP3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 SDSLQ96GA7 329 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 KCNK16Q96T55 309 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 NGBQ9NPG2 151 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 FANCFQ9NPI8 374 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 OR1A1Q9P1Q5 309 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 ATXN10Q9UBB4 475 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 ONECUT1Q9UBC0 465 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 MGAT4BQ9UQ53 548 aa3.09□□□□□ -1.91
SMCHD1-204ENST00000581226 ARHGAP23Q9P227 1491 aa3.09□□□□□ -1.92
SMCHD1-204ENST00000581226 NOTCH2Q04721 2471 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 VPS26AO75436 327 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 CHRNA1P02708 482 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 OR8U8P0C7N1 319 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 THRBP10828 461 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 ARF4P18085 180 aaPredicted RBP3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 PAICSP22234 425 aaKnown RBP3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 DNAJB1P25685 340 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 DPP4P27487 766 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 MTTPP55157 894 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 GMFBP60983 142 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 NTHL1P78549 312 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 ZNF45Q02386 682 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 HSF2Q03933 536 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 CKAP4Q07065 602 aaKnown RBP3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 RGS1Q08116 209 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 ORC2Q13416 577 aaPredicted RBP3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 Q6ZVH6 145 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 ERASQ7Z444 233 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 PPP1R27Q86WC6 154 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 CBWD2Q8IUF1 395 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 ZBTB44Q8NCP5 570 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 BBS1Q8NFJ9 593 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 CNIH3Q8TBE1 160 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 HPDLQ96IR7 371 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 NICN1Q9BSH3 213 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 KRT23Q9C075 422 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 C1orf21Q9H246 121 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 PAK1IP1Q9NWT1 392 aaPredicted RBP3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 RDH8Q9NYR8 311 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 HOOK1Q9UJC3 728 aaKnown RBP3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 RNF6Q9Y252 685 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 CLCA3PQ9Y6N3 262 aa3.08□□□□□ -1.92
SMCHD1-204ENST00000581226 IGKV6D-21A0A0A0MT36 114 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 A0A0U1RQV5 110 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 SMIM28A0A1B0GU29 152 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 HBQ1P09105 142 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 PRG2P13727 222 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 FUT3P21217 361 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 GCKP35557 465 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 RBMXP38159 391 aaKnown RBP3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 PTGFRP43088 359 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 NAPAP54920 295 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 ST3GAL3Q11203 375 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 PSG7Q13046 419 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 HERPUD1Q15011 391 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 TRIP10Q15642 601 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 IL17AQ16552 155 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 AANATQ16613 207 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 SULT1C3Q6IMI6 304 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 ZCCHC12Q6PEW1 402 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 ISLR2Q6UXK2 745 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 DNM1P46Q6ZS02 220 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 LHFPL4Q7Z7J7 247 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 SYVN1Q86TM6 617 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 ZNF100Q8IYN0 542 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 CNNM3Q8NE01 707 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 ELSPBP1Q96BH3 223 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 SMIM14Q96QK8 99 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 PLEKHF1Q96S99 279 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 SLC30A2Q9BRI3 323 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 PPDPFQ9H3Y8 114 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 CYTH4Q9UIA0 394 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 NCAPD2Q15021 1401 aa3.07□□□□□ -1.92
SMCHD1-204ENST00000581226 TUBAL3A6NHL2 446 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 OR6C65A6NJZ3 312 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 DUX1O43812 170 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 PRPSAP2O60256 369 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 IGLL1P15814 213 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 SERPINA2P20848 420 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 GABRR1P24046 479 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 MAPK3P27361 379 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 NTSP30990 170 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 MAGEA5P43359 124 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 ZNF133P52736 654 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 IL1RL1Q01638 556 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 CHI3L2Q15782 390 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 CCDC14Q49A88 953 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 PARP10Q53GL7 1025 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 CNSTQ6PJW8 725 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 CENPUQ71F23 418 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 ZNF589Q86UQ0 364 aaPredicted RBP3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 OR5AU1Q8NGC0 362 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 M1APQ8TC57 530 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 RNF138Q8WVD3 245 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 VPS35Q96QK1 796 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 FICDQ9BVA6 458 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 ECT2Q9H8V3 914 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 AGPAT5Q9NUQ2 364 aa3.06□□□□□ -1.92
SMCHD1-204ENST00000581226 MARCH5Q9NX47 278 aa3.06□□□□□ -1.92
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms