RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 RPRD1BQ9NQG5 326 aaKnown RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 PRMT8Q9NR22 394 aaPredicted RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 TECRQ9NZ01 308 aaKnown RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 TMOD2Q9NZR1 351 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 ARMCX1Q9P291 453 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 SLC6A5Q9Y345 797 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 NAALAD2Q9Y3Q0 740 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 NUP188Q5SRE5 1749 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 LRP5O75197 1615 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 CICQ96RK0 1608 aaPredicted RBP3.94□□□□□ -1.78
NUP88-213ENST00000576862 ARFGEF2Q9Y6D5 1785 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 FAM205AQ6ZU69 1335 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 RREB1Q92766 1687 aa3.94□□□□□ -1.78
NUP88-213ENST00000576862 GON4LQ3T8J9 2241 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 IGKV6D-41A0A0C4DH26 115 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 ERLIN1O75477 346 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 ANXA9O76027 345 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 CHRNA1P02708 482 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 KRT6BP04259 564 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 IVLP07476 585 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 FGF4P08620 206 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 GSTA2P09210 222 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 KRT6CP48668 564 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 PITPNBP48739 271 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 CARD18P57730 90 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 RUNX3Q13761 415 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 PRAMEF8Q5VWM4 474 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 ZCCHC12Q6PEW1 402 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 TMEM270Q6UE05 265 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 AFTPHQ6ULP2 937 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 KCTD9Q7L273 389 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 SERINC5Q86VE9 423 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 COMTD1Q86VU5 262 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 PSTKQ8IV42 348 aaKnown RBP3.93□□□□□ -1.78
NUP88-213ENST00000576862 NKAIN4Q8IVV8 208 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 ZCCHC7Q8N3Z6 543 aaKnown RBP3.93□□□□□ -1.78
NUP88-213ENST00000576862 MRAPQ8TCY5 172 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 CDKL2Q92772 493 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 HAS2Q92819 552 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 TPD52L3Q96J77 140 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 TCEANC2Q96MN5 208 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 NSRP1Q9H0G5 558 aaKnown RBP3.93□□□□□ -1.78
NUP88-213ENST00000576862 TSPYL1Q9H0U9 437 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 GLT8D2Q9H1C3 349 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 CARD9Q9H257 536 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 LRRC40Q9H9A6 602 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 TNFRSF19Q9NS68 423 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 CENPMQ9NSP4 180 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 SOHLH2Q9NX45 425 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 RAB20Q9NX57 234 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 CHMP5Q9NZZ3 219 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 MTRF1LQ9UGC7 380 aaKnown RBP3.93□□□□□ -1.78
NUP88-213ENST00000576862 MAD2L2Q9UI95 211 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 KCNK6Q9Y257 313 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 U3KQV3 271 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 MYO3BQ8WXR4 1341 aa3.93□□□□□ -1.78
NUP88-213ENST00000576862 TNKS1BP1Q9C0C2 1729 aaKnown RBP3.92□□□□□ -1.78
NUP88-213ENST00000576862 CARMIL3Q8ND23 1372 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 RPAP1Q9BWH6 1393 aaPredicted RBP3.92□□□□□ -1.78
NUP88-213ENST00000576862 COL4A1P02462 1669 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 SLC15A5A6NIM6 579 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 ZNF879B4DU55 563 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 H0Y8G0 127 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 SRPX2O60687 465 aaPredicted RBP3.92□□□□□ -1.78
NUP88-213ENST00000576862 FLOT1O75955 427 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 PDGFBP01127 241 aaPredicted RBP3.92□□□□□ -1.78
NUP88-213ENST00000576862 CHRNGP07510 517 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 EPB41P11171 864 aaKnown RBP3.92□□□□□ -1.78
NUP88-213ENST00000576862 RALAP11233 206 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 ZNF24P17028 368 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 BMI1P35226 326 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 CCT6AP40227 531 aaKnown RBP3.92□□□□□ -1.78
NUP88-213ENST00000576862 SERPINH1P50454 418 aaKnown RBP3.92□□□□□ -1.78
NUP88-213ENST00000576862 PRRX1P54821 245 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 BNIP1Q12981 228 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 MSLNQ13421 630 aaPredicted RBP3.92□□□□□ -1.78
NUP88-213ENST00000576862 HEPACAMQ14CZ8 416 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 P2RY14Q15391 338 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 STXBP2Q15833 593 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 ZSCAN26Q16670 478 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 C1orf185Q5T7R7 199 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 LIPJQ5W064 366 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 PDPK2PQ6A1A2 396 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 CLEC2AQ6UVW9 174 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 MFSD7Q6UXD7 560 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 STOX1Q6ZVD7 989 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 VASH2Q86V25 355 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 SLC7A5P1Q8MH63 180 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 CD177Q8N6Q3 437 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 UBTD2Q8WUN7 234 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 MRPL38Q96DV4 380 aaKnown RBP3.92□□□□□ -1.78
NUP88-213ENST00000576862 MSANTD3Q96H12 275 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 MTMR9Q96QG7 549 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 NAPBQ9H115 298 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 TRPV6Q9H1D0 765 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 GORASP2Q9H8Y8 452 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 VSIG4Q9Y279 399 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 COMMD3-BMI1R4GMX3 469 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 SPACA6W5XKT8 324 aa3.92□□□□□ -1.78
NUP88-213ENST00000576862 NHSQ6T4R5 1651 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms