RNA–Protein interactions for RNA: ENST00000574755.5

VPS33B-208, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 2,356 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-208ENST00000574755 ITGADQ13349 1161 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 KCNAB1Q14722 419 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 NNATQ16517 81 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 ZNF404Q494X3 552 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 RNLSQ5VYX0 342 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 C19orf48Q6RUI8 117 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 OR2T33Q8NG76 320 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 PFN4Q8NHR9 129 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 RNFT2Q96EX2 444 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 TBC1D17Q9HA65 648 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 HHATLQ9HCP6 504 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 ERVK-19Q9WJR5 959 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 MAU2Q9Y6X3 613 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 EML5Q05BV3 1969 aa13.01□□□□□ -0.33
VPS33B-208ENST00000574755 SDK1Q7Z5N4 2213 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 ZNF749O43361 778 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 HBQ1P09105 142 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 IFI30P13284 250 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 DRD5P21918 477 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 CD1CP29017 333 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 GCGRP47871 477 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 EPHA4P54764 986 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 HSD17B7P56937 341 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 RAB40BQ12829 278 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 GRM7Q14831 915 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 INAQ16352 499 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 PGGHGQ32M88 737 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 HSDL2Q6YN16 418 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 RNF113BQ8IZP6 322 aaKnown RBP13□□□□□ -0.33
VPS33B-208ENST00000574755 GRHL3Q8TE85 626 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 CNOT9Q92600 299 aaKnown RBP13□□□□□ -0.33
VPS33B-208ENST00000574755 SAMD8Q96LT4 415 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 RAB33BQ9H082 229 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 RACGAP1Q9H0H5 632 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 TMEM27Q9HBJ8 222 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 Q9N2J8 555 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 C20orf141Q9NUB4 165 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 C14orf105Q9NVL8 296 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 CLDN16Q9Y5I7 305 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 IRGMA1A4Y4 181 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 H0YIG0 161 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 SOX1O00570 391 aaPredicted RBP13□□□□□ -0.33
VPS33B-208ENST00000574755 MAGEB3O15480 346 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 IGKV1D-16P01601 117 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 FUT1P19526 365 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 ETV5P41161 510 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 GPR3P46089 330 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 SEPHS1P49903 392 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 ETV1P50549 477 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 AFF3P51826 1226 aaKnown RBP13□□□□□ -0.33
VPS33B-208ENST00000574755 LIMK1P53667 647 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 KHDRBS1Q07666 443 aaKnown RBP eCLIP13□□□□□ -0.33
VPS33B-208ENST00000574755 MINDY4Q4G0A6 757 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 CD180Q99467 661 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 ZNF559Q9BR84 538 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 C6orf62Q9GZU0 229 aaPredicted RBP13□□□□□ -0.33
VPS33B-208ENST00000574755 ATP13A2Q9NQ11 1180 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 CHCHD3Q9NX63 227 aaKnown RBP13□□□□□ -0.33
VPS33B-208ENST00000574755 B3GNT3Q9Y2A9 372 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 CARD8Q9Y2G2 431 aa13□□□□□ -0.33
VPS33B-208ENST00000574755 UNC119BA6NIH7 251 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 KDM4EB2RXH2 506 aaPredicted RBP12.99□□□□□ -0.33
VPS33B-208ENST00000574755 BCAT2O15382 392 aaPredicted RBP12.99□□□□□ -0.33
VPS33B-208ENST00000574755 BMP4P12644 408 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 ZNF12P17014 697 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 CDH11P55287 796 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 OR1D5P58170 312 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 ZNF613Q6PF04 617 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 NPSR1Q6W5P4 371 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 CDK20Q8IZL9 346 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 CLDN22Q8N7P3 220 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 RCBTB1Q8NDN9 531 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 C16orf52Q8NHV5 167 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 FANK1Q8TC84 345 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 RFKQ969G6 155 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 YIPF2Q9BWQ6 316 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 OR10A5Q9H207 317 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 MMP27Q9H306 513 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 OR52D1Q9H346 318 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 EXOSC4Q9NPD3 245 aaKnown RBP12.99□□□□□ -0.33
VPS33B-208ENST00000574755 MRPS18AQ9NVS2 196 aaKnown RBP12.99□□□□□ -0.33
VPS33B-208ENST00000574755 SIDT1Q9NXL6 827 aaKnown RBP12.99□□□□□ -0.33
VPS33B-208ENST00000574755 ZNF223Q9UK11 482 aaPredicted RBP12.99□□□□□ -0.33
VPS33B-208ENST00000574755 OR10H1Q9Y4A9 318 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 CSNK1G3Q9Y6M4 447 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 CACNA1IQ9P0X4 2223 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 FITM1A5D6W6 292 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 METTL15A6NJ78 407 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 DSCR3O14972 297 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 PFDN1O60925 122 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 OR2B3O76000 313 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 LYPD3O95274 346 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 MAKP20794 623 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 ALAS2P22557 587 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 PSMA1P25786 263 aaKnown RBP12.99□□□□□ -0.33
VPS33B-208ENST00000574755 ARL4DP49703 201 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 MLLT11Q13015 90 aaPredicted RBP12.99□□□□□ -0.33
VPS33B-208ENST00000574755 AMZ1Q400G9 498 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 C3orf38Q5JPI3 329 aa12.99□□□□□ -0.33
VPS33B-208ENST00000574755 TTLL10Q6ZVT0 673 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms